Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29720 635 / 0 ATPAO5 polyamine oxidase 5 (.1) AT3G13682 116 / 3e-27 LDL2 LSD1-like2 (.1) AT1G62830 115 / 7e-27 ATLSD1, ATSWP1, LDL1, SWP1 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) AT3G10390 110 / 3e-25 FLD FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) AT1G65840 102 / 9e-23 ATPAO4 polyamine oxidase 4 (.1) AT3G59050 100 / 3e-22 ATPAO3 polyamine oxidase 3 (.1) AT4G16310 100 / 7e-22 LDL3 LSD1-like 3 (.1) AT2G43020 80 / 1e-15 ATPAO2 polyamine oxidase 2 (.1) AT5G13700 69 / 5e-12 ATPAO1, APAO polyamine oxidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G013100 [exp] 117 / 2e-27 AT1G62830 964 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Potri.005G235400 [exp] 113 / 5e-26 AT4G16310 1192 / 0.0 LSD1-like 3 (.1) Potri.008G035200 [exp] 110 / 3e-25 AT3G10390 1152 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.010G227200 [exp] 110 / 4e-25 AT3G10390 1135 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.011G127600 [exp] 109 / 8e-25 AT3G13682 959 / 0.0 LSD1-like2 (.1) Potri.002G027100 [exp] 103 / 7e-23 AT4G16310 1504 / 0.0 LSD1-like 3 (.1) Potri.004G075800 [exp] 101 / 1e-22 AT1G65840 728 / 0.0 polyamine oxidase 4 (.1) Potri.017G144001 [exp] 99 / 6e-22 AT1G65840 721 / 0.0 polyamine oxidase 4 (.1) Potri.015G074600 [exp] 91 / 4e-19 AT5G13700 395 / 5e-134 polyamine oxidase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040558 [exp] 335 / 7e-112 AT4G29720 305 / 6e-101 polyamine oxidase 5 (.1) Lus10006012 [exp] 316 / 5e-105 AT4G29720 302 / 2e-100 polyamine oxidase 5 (.1) Lus10006011 [exp] 266 / 9e-86 AT4G29720 238 / 2e-75 polyamine oxidase 5 (.1) Lus10040559 [exp] 210 / 6e-65 AT4G29720 224 / 4e-71 polyamine oxidase 5 (.1) Lus10012283 [exp] 130 / 1e-31 AT1G62830 984 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10015996 [exp] 127 / 1e-30 AT1G62830 988 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10024311 [exp] 109 / 1e-24 AT4G16310 1471 / 0.0 LSD1-like 3 (.1) Lus10017464 [exp] 103 / 1e-22 AT3G10390 1198 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Lus10033928 [exp] 100 / 7e-22 AT4G16310 1391 / 0.0 LSD1-like 3 (.1) Lus10038587 [exp] 94 / 1e-19 AT3G13682 971 / 0.0 LSD1-like2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13450 [poplar] [flax] NAD_binding_8 NAD(P)-binding Rossmann-like domain
Representative CDS sequence Show only first row Show all	>Potri.006G151300.1 pacid=42769889 polypeptide=Potri.006G151300.1.p locus=Potri.006G151300 ID=Potri.006G151300.1.v4.1 annot-version=v4.1 ATGGTGGCCAAGAAGCCAAGAATCGTTATTATTGGAGCGGGAATGGCAGGTCTCACAGCTGCAAACAAGCTCTACACTTCCAGTAGCTCTAACGATATGT TTGAGCTCTGCGTTGTGGAAGGTGGTTCAAGGATTGGTGGAAGAATTAACACTTCAGAATTTGGTGGTGACAGGATAGAGATGGGTGCAACATGGATCCA TGGCATTGGAGGCAGCCCAGTTCACAAAATTGCTCAGGAAATCCATTCACTTGAGTCTGAGCAGCCGTGGGAGTGCATGGATGGACTCTTGGACGAGCCA AAGACCGTCGCTGAAGGCGGTTTCGAGCTTAGTCCATCTCTTGTGGAGTCAATATCCACAGTCTTTAAGAACCTGATGGATTATGCCCAGGGGAAACTGA TTGAACGTGAGGAAAGCAGTGAAGAGGTTGATTTCTGCAAGCTTGCAGATAAGATTTGTAAGATTTGTCCAAGCAATGGCGGTGGTCCTGGAAAGCTCAG TGTTGGTTCTTTTCTCAGACAAGCCCTTAATGTTTACTGGGATTCTGTGAAAGAGCAGGAACAGATCGAAGGGTGTGGTAATTGGAGCAGAAAGTTGATT GAAGAAGCCATATTTGCAATGCATGAAAACATTCAAAGGACCTATACTTCCGCGGGTGATCTCTTGACTCTAGATTTTGATGCAGAAAGTGAGTATCGCA TGTTTCCAGGTGAAGAAATCACCATTGCTAAGGGCTACTTGAGTGTCATTGAATCGCTAGCTTCAGTTTTACCTCATGGCCTAATCCAATTAGGCCGCAA GGTCGCAAGAATTGAATGGCAGCCTGAAGCTCACCAATCAAGCGGACATGGTTGTGCTGGTAGGCCTGTGAAGATACATTTCTGCGATGGATCAATAATG TCAGCTGATCATGTTATAGTTACAGTTTCACTCGGGGTACTTAAAGCTGGAATTGGTCCAGATTCAGGTATGTTCAACCCCCCTCTTCCAACTTTCAAGA CAGAGGCCATATCCAGGCTAGGATTTGGTGTTGTGAATAAGTTGTTTTTGCAACTGAGTTCAAGGCACGATGGCAGAGATGGTGATTACAGCAAGTTCCC ATTCCTGCAAATGGCTTTTCATCGCCCAGACTCCGAATGGAGGCATAAAAAGATACCATGGTGGATGAGAAGGACAGCTTCTCTGAGTCCAATTTATAAA AATTCTGGTGTGTTGCTATCTTGGTTTGCAGGGAAAGAAGCTCTTGAGCTCGAAACTCTTAGTGATGAAGAGATTATTGATGGGGTGTCAACAACACTAT CTAGCTTTTTGTCACAGCCCCACAAACAATTGAATTCTAATTCTCATGGAGTATGCAATGGGAAAGAGAAATCTGTGGATGGGAATAGAGTTAGATTCGC CAACGTATTGAAGAGTAAATGGGGTAACGATCCTCTCTTCTTGGGATCTTACAGTTATGTTGCAGTTGGATCAAGTGGCGATGACCTAGACACATTGGCA GAGCCATTGCCAAATACTGATACTTTAGGATCTGCTCCACTTCAAATTCTGTTTGCAGGGGAGGCAACACACAGAACCCATTATTCTACTACTCACGGAG CTTATTTTAGTGGTCTTAGAGAAGCCAGTAGGCTTCTTCAACATTATCATTGTGTTGGGGTTTAG
AA sequence Show only first row Show all	>Potri.006G151300.1 pacid=42769889 polypeptide=Potri.006G151300.1.p locus=Potri.006G151300 ID=Potri.006G151300.1.v4.1 annot-version=v4.1 MVAKKPRIVIIGAGMAGLTAANKLYTSSSSNDMFELCVVEGGSRIGGRINTSEFGGDRIEMGATWIHGIGGSPVHKIAQEIHSLESEQPWECMDGLLDEP KTVAEGGFELSPSLVESISTVFKNLMDYAQGKLIEREESSEEVDFCKLADKICKICPSNGGGPGKLSVGSFLRQALNVYWDSVKEQEQIEGCGNWSRKLI EEAIFAMHENIQRTYTSAGDLLTLDFDAESEYRMFPGEEITIAKGYLSVIESLASVLPHGLIQLGRKVARIEWQPEAHQSSGHGCAGRPVKIHFCDGSIM SADHVIVTVSLGVLKAGIGPDSGMFNPPLPTFKTEAISRLGFGVVNKLFLQLSSRHDGRDGDYSKFPFLQMAFHRPDSEWRHKKIPWWMRRTASLSPIYK NSGVLLSWFAGKEALELETLSDEEIIDGVSTTLSSFLSQPHKQLNSNSHGVCNGKEKSVDGNRVRFANVLKSKWGNDPLFLGSYSYVAVGSSGDDLDTLA EPLPNTDTLGSAPLQILFAGEATHRTHYSTTHGAYFSGLREASRLLQHYHCVGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Potri.006G151300 [exp]	0	1
AT1G54460			TPX2 (targeting protein for Xk...		Potri.005G055900 [exp]	6.32	0.6604
AT1G55270			Galactose oxidase/kelch repeat...		Potri.001G008000 [exp]	14.73	0.6634
AT1G55340			Protein of unknown function (D...		Potri.003G221000 [exp]	16.43	0.6364
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Potri.018G124000 [exp]	18.49	0.5998
AT4G32390			Nucleotide-sugar transporter f...		Potri.006G252500 [exp]	20.19	0.6792
AT2G30942			Protein of unknown function (D...		Potri.002G263300 [exp]	23.19	0.6916
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Potri.018G053640 [exp]	28.03	0.6658
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Potri.019G047200 [exp]	32.49	0.6227
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Potri.014G043700 [exp]	44.07	0.5961
AT5G27930			Protein phosphatase 2C family ...		Potri.013G012200 [exp]	44.09	0.6122

Compare expression of checked genes

Potri.006G151300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.