Plant FIBer expression Database

Potri.006G151500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G29560 455 / 6e-157 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF11510 FA_FANCE Fanconi Anaemia group E protein FANCE
Representative CDS sequence
>Potri.006G151500.1 pacid=42770701 polypeptide=Potri.006G151500.1.p locus=Potri.006G151500 ID=Potri.006G151500.1.v4.1 annot-version=v4.1
ATGGAGGCATGGGTTCCTCTCTTTAACATATTCCTTAACTCCCCAACACCAGAAAATGAAGCATCCCTCTGGTTAGAACAATCTTCTTCATCATCATCAG
TTCCAATCACCACAACCTCTTTTCTCTCTTTACTCGCCGAACCCATTATAAACAACTCATCCACAAACAGCATGTGTGACAGGAGGGTCATGTTTCTACA
AACACTGCCTTTTCTTGTCCAGTCCAGAATTTTGTCCTTTCTTGGTTTTGAGCATCAAAGGTTTTGCAAGCGGGACTTATCTAAGTTGGCCAGGACTTTG
TTGACAGATACCGAGGGGATTGATTTCTGGGTTAAGAGGGCTGCCCGCAATCTGCTTGATAAAGTGTCTGACTCAAATTACCAATGGATTTCTGGTTTAA
GCTTAGACTCTGGAGAAGAGAGAGTTGATGAGGAGTTTGGTTCAATCCCAGATTACCTTAAAGATGCTGCTTCAAGTGCAAATGAACTGTTTCTACCTTG
GTTGCCTCTCTCGCATGATACATTGAACTCCAGAGAATTGTTTGCTGGTTATGAAAGCCCAGAAGATTTCTTGAGTCAAGTTGGAGAGGGTTCTGGTGAT
AATTCGAAAGATGTTGCGGAGGAAATGGAGATTGATTTGGTCATGGTTGCTCCTTTAGATGAGGAAATTCAAAACATGGCAACAAGTTTGAAAGAGAGGA
TTATGACTTTTGAGTCTAGTTCTAAAACTGTTGAGTTAGCAAATGAAATTCGCAGACTTAGTTTTGAGAGAGAAGCCGATCCTTTTGTGATTTTGGGTTT
GCTTGAACCTTGGAAAGCTGATGATGAGACTGCTTCAATTCTGGTTTTTCATCTCTCAAATGGAAGAGAAGAAGAAGAAGAGATCGCTTGGCCTAGCAAA
GTTTTGTGTTCAATTATGCTTCCAAAGATGTTGGTGCTTGAAGAGCCAGCATCACGTGTACTGGTGATTTCAATGGTAGAGTACTGCAAGCTTCACCAGA
GAGCTGCTGAATGTGCACTATTGCTTCCGCTGATAATGAAAAGGAGTGGCATCAACAACCACATGTGTGATGTGATCACCAGGATCGTCAAGGAATCCTT
GCACCCAGCTCATGTTTCAGCTTTTTGCCGGAAGCTGCTTTGTGGACAAGAAGTTGAGAAACGATCCATCATTCTTCCTTGCCACCAATGCCTTGTATCC
AGTCAACTGGTTTGGACGGAATCATTGTTTAATCTGTTTCAAAATATCTTAAATCATAACGTTCAGCTAACTCAGGATTCAGTTGATCAACTTGTATTGC
TTATTAGGGAGTTGGCCCCAAGTTTCTCCAAATCTCTGAAATTCGGGAATTTTCTGTTGTGTTTCATCACCAGATGTTCTTTATTATTGAAGTCTCATAA
ACTTTTATTGGTTGAAGCAGTAGCGAAGACCAATACTCTTGTCACTAAATCCATATTATCAAAATTGGCTAGCTTCTAG
AA sequence
>Potri.006G151500.1 pacid=42770701 polypeptide=Potri.006G151500.1.p locus=Potri.006G151500 ID=Potri.006G151500.1.v4.1 annot-version=v4.1
MEAWVPLFNIFLNSPTPENEASLWLEQSSSSSSVPITTTSFLSLLAEPIINNSSTNSMCDRRVMFLQTLPFLVQSRILSFLGFEHQRFCKRDLSKLARTL
LTDTEGIDFWVKRAARNLLDKVSDSNYQWISGLSLDSGEERVDEEFGSIPDYLKDAASSANELFLPWLPLSHDTLNSRELFAGYESPEDFLSQVGEGSGD
NSKDVAEEMEIDLVMVAPLDEEIQNMATSLKERIMTFESSSKTVELANEIRRLSFEREADPFVILGLLEPWKADDETASILVFHLSNGREEEEEIAWPSK
VLCSIMLPKMLVLEEPASRVLVISMVEYCKLHQRAAECALLLPLIMKRSGINNHMCDVITRIVKESLHPAHVSAFCRKLLCGQEVEKRSIILPCHQCLVS
SQLVWTESLFNLFQNILNHNVQLTQDSVDQLVLLIRELAPSFSKSLKFGNFLLCFITRCSLLLKSHKLLLVEAVAKTNTLVTKSILSKLASF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G29560 unknown protein Potri.006G151500
[exp]
0 1
AT1G03220 Eukaryotic aspartyl protease f... Potri.005G095600
[exp]
1.41 0.8003
AT3G15200 Tetratricopeptide repeat (TPR)... Potri.011G115500
[exp]
3.00 0.7343
AT1G32928 unknown protein Potri.011G151600
[exp]
7.34 0.7349
AT4G03270 CYCD6;1 Cyclin D6;1 (.1) Potri.011G040500
[exp]
8.48 0.7333
AT3G23230 AP2_ERF ERF98 Integrase-type DNA-binding sup... Potri.008G166000
[exp]
13.96 0.6974
AT4G12731 unknown protein Potri.009G022366
[exp]
17.83 0.6949
AT3G19184 B3 AP2/B3-like transcriptional fa... Potri.004G141900
[exp]
18.13 0.6948
AT4G23160 CRK8 cysteine-rich RLK (RECEPTOR-li... Potri.011G028901
[exp]
18.24 0.6888
AT3G49120 PRX34, PRXCB, A... PEROXIDASE 34, ARABIDOPSIS THA... Potri.001G011000
[exp]
18.76 0.6945
AT5G24130 unknown protein Potri.012G031000
[exp]
19.33 0.6453

Potri.006G151500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.