Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56890 845 / 0 Protein kinase superfamily protein (.1) AT2G20300 626 / 0 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) AT4G02010 391 / 4e-122 Protein kinase superfamily protein (.1) AT5G13160 322 / 2e-99 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT1G20650 317 / 1e-98 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT1G61860 315 / 9e-98 Protein kinase superfamily protein (.1) AT3G20530 313 / 4e-97 Protein kinase superfamily protein (.1) AT5G02800 309 / 5e-96 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT3G58690 308 / 2e-95 Protein kinase superfamily protein (.1) AT1G68690 318 / 4e-95 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G068100 [exp] 1178 / 0 AT5G56890 801 / 0.0 Protein kinase superfamily protein (.1) Potri.003G039100 [exp] 778 / 0 AT5G56890 701 / 0.0 Protein kinase superfamily protein (.1) Potri.014G194300 [exp] 628 / 0 AT2G20300 966 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.002G254600 [exp] 623 / 0 AT2G20300 947 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.002G194700 [exp] 413 / 2e-130 AT4G02010 958 / 0.0 Protein kinase superfamily protein (.1) Potri.014G119100 [exp] 404 / 4e-127 AT4G02010 993 / 0.0 Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 328 / 8e-102 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 327 / 2e-101 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.011G137000 [exp] 321 / 2e-100 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027635 [exp] 957 / 0 AT5G56890 887 / 0.0 Protein kinase superfamily protein (.1) Lus10011933 [exp] 929 / 0 AT5G56890 880 / 0.0 Protein kinase superfamily protein (.1) Lus10011917 [exp] 622 / 0 AT2G20300 951 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Lus10022848 [exp] 598 / 0 AT2G20300 912 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Lus10037526 [exp] 363 / 6e-112 AT4G02010 865 / 0.0 Protein kinase superfamily protein (.1) Lus10011466 [exp] 375 / 9e-110 AT2G47330 1110 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015756 [exp] 329 / 4e-102 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10040050 [exp] 320 / 1e-99 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Lus10019621 [exp] 318 / 4e-99 AT3G20530 536 / 0.0 Protein kinase superfamily protein (.1) Lus10043050 [exp] 317 / 2e-98 AT3G20530 561 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G152000.13 pacid=42767450 polypeptide=Potri.006G152000.13.p locus=Potri.006G152000 ID=Potri.006G152000.13.v4.1 annot-version=v4.1 ATGGGGTTGGTTATGGTGCCAGCCATTCTTCAGCTGCTGCTCAAACTCTGTGCCATTGGCTTTGTTTTCACAGTTCAAGGATCTACTGGTGACAAGATAT CCCCAACTCCAGCAATTGTTTCTGATATTTCTCCAATTGACGGAACACCTGGTCCCCAACTCCAGCCATTCAGAAGCAGTGCACCAAGCTCAGAGTCTCA GACAAATGGGTCACATGTACCCTCCCCACTTGCATTGCCGCCAATCACATCTGCCCCAGTTCCCCAAACAATCACAGGGCTTGTACCATTACATTCCCCT AGTCCTCCAGTAGTAACAACTCCTCCCTTGATTTTTCAAGGACATGTACCATCCTTGTCACCAAGTATTTCAGTTGTATCTCCAACATATAATACAGCTC CTCCACCCACGCTTAATCAAGGGCATGAGCCACCCAAGCCGCCAAGTGCTCATCGAAGAGAGGCACCAGTTAGGCATACTCCTGTCTCTGTGTCGAGTGC TCCAGCTGCAGTACCTTCAGGACAGTCTCCAAAAAATTCAACAGTCAGCCAATCAAGTGCACCCAAAGCTTCATCACCAAGTTCCCCTAAAAAAGATATA TTTTTCAGCGGTGCTCCCATCCTAAAATCAATTGCTCCAGCTGTGTCTCCATCAAGGAAATCAAAACAAAATCATCCAGCAGTTCCCCCAATTGCACCGG CAGCAAGGCCATCTGCAGTTCCAGTTGTATCACCAATTGGAGCAATGCCGCAAAATTCATCAGCAACCCACCCAGTTATGCCTGGAGAATCTCCTTCTAC ATTATCAGGTCCAAATGTCTCCTACTCCTCTGCTTCTACCCCAAGCATTGACCATAAAAAAAATGGAATTCCAGTGTCTGCACAACCAAATGGAACTTTA CCTCCCTTGAGTCATTCTCCAGCTAAAGGACCAGTCATCCCACTGTCATTTCTTCCAATAAGCCGGCATAGACAATATGCTCCTCCACCTCTTAGTTCTC CAGTGACCAATATCTCACCTGCTCCTTCACCCTCTCCAACTGCAGTATCTGGTTGGACAAAAATGCCAGTTCTTTCCCCTGAAGCTACTCCTCTTGGCTT TTCTTCAAGGACTCCCAAGATGCCCCCCCTGCCACCACTCCACACATTGCCACCTCCACCTCCTAATGAAGATTGTTCAGCAACTGTGTGCACAGAGCCG TACACAAATACTCCTCCTGGGTCACCATGTGGCTGTGTCTTGCCCATGCAAGTAGGACTGAGCGTTAGTGTTGCACTGTATACCTTTTTCCCTTTAGTCT CAGAGCTTGCTCAGGAAATTGCCACTGGCGTTTTTATGAAACAAAGCCAAGTTCACATTATTGGGGCCAATGCTGCCAGCCAGCAGCCAGAGAAGACAAT CATCCTCGTTGACTTGGTTCCCCTTGGAGAAAGATTTGATAATACAACTGCCTTTTTTATTTATCAAAGATTTTGGCACAAACAAGTGGTTATAAACCCT TCCTTTTTTGGTGACTATGAAGTATTATATGTGCGCTATCTAGGTTTACCTCCATCTCCACATTTGGCACCTTCTGGAATTGCTATAATTGATGATGGGC CATATTCTGGTGATGACAACAATGCAAGGACAATAAAGCCCCTAGGGGTTGATGTACATAGGAAGCATAAAAATGGGCTTGGTCATGGCGTGATTGCTAT TATTGCTCTGTCAGGTGTTGTAGCACTAGTTTTATTCTCTGCTGTTGCTTGGGCATTGCTGTTTAGACATAGAGACCGTGCTAGTCAATCAGAAACAGTC CTGCAGCCTTTGCCACCCTCAGTTGTGAAACCATCAGGTATTGCTGGGTCATTGGTTGGAAGTGGTCTTAGTTCTGCCTCATTATCCTTTGGATCTAGTA TTCCAGCGTATGCAGGATCTGCTAAGACCTTCAGCACAAGTGACATAGAGAGAGCCACCAATAGCTTTGATGCTTCAAGAATACTTGGGGAGGGTGGCTT TGGGCGTGTTTACTGTGGTGTTCTAGAAGATGGGACCAAAGTTGCAATAAAAGTTCTAAAGAGAGATGATCAGCAAGGTGGTCGAGAATTCTTGGCAGAG GTTGAGATGCTTAGCCGCCTTCATCACAGAAACTTGGTCAAGTTGATTGGAATATGCACAGAGGAGCGTTCACGCAGCTTGGTCTATGAGCTAATACCAA ATGGCAGTGTGGAATCTCATCTACATGGGGTTGATAAAGGATCTGCTTCTCTTGATTGGGATGCTCGGATCAAGATTGCACTTGGTGCAGCTCGAGGTCT AGCTTATCTACACGAGGATTCAAGCCCTTGTGTGATACACAGGGACTTCAAGTCCAGCAACATTTTGTTGGAACACGATTTCACACCAAAAGTCTCAGAC TTTGGTTTGGCTAGGACTGCCTTGGATGAGGAAAATCAACACATATCAACACGTGTCATGGGAACTTTTGGGTATGTCGCCCCAGAGTATGCAATGACTG GCCATCTTCTTGTGAAGAGTGATGTTTACAGTTATGGTGTAGTCCTTCTTGAGCTCCTAACAGGACGCAAACCAGTGGATATGTCCCAGCCACCTGGTCA AGAGAATCTAGTTACATGGGCCCGTCCGCTTCTAACAAGTAAAGAAGGGCTGAAATTAATTATAGATCCGTCTCTAGGATCTGATGTGCCTTTTGATAGT GTAGCAAAAGTAGCAGCTATTGCATCAATGTGTGTTCAACCAGAGGTATCGAACCGTCCTTTTATGGGTGAGGTTGTTCAGGCCTTGAAACTAGTATCTA ATGAGTGTGATGAGGCAAAGGAACTGGATTCCAGAAGTTCCAGTCAAGGTTTGTCTATTGACATGGATGCGGAGGTCAGTGCTGTCTCAGGACAGCTGCG CGGTGCTTTCCAAAATCACGCCCTAGTCCTTAATTATGATTCTGAGCCAGATATTGAAAGGGGACTCCCAGTTTCAGATTTGCTCAGTACATCAGTCGGG TATGGAAGGGAAGGCTGTGGATCATTGAGAAGATGCTCATCAGGTCCATTGCGAAAGGTAAGGGGCAGAGAGTTATTGCGAAAAATGAGATTGACGGGGG AAACTGTGAGTGAACGTGGGACCATCTTCAAAATGTGGCCAGGTTCACATTGA
AA sequence Show only first row Show all	>Potri.006G152000.13 pacid=42767450 polypeptide=Potri.006G152000.13.p locus=Potri.006G152000 ID=Potri.006G152000.13.v4.1 annot-version=v4.1 MGLVMVPAILQLLLKLCAIGFVFTVQGSTGDKISPTPAIVSDISPIDGTPGPQLQPFRSSAPSSESQTNGSHVPSPLALPPITSAPVPQTITGLVPLHSP SPPVVTTPPLIFQGHVPSLSPSISVVSPTYNTAPPPTLNQGHEPPKPPSAHRREAPVRHTPVSVSSAPAAVPSGQSPKNSTVSQSSAPKASSPSSPKKDI FFSGAPILKSIAPAVSPSRKSKQNHPAVPPIAPAARPSAVPVVSPIGAMPQNSSATHPVMPGESPSTLSGPNVSYSSASTPSIDHKKNGIPVSAQPNGTL PPLSHSPAKGPVIPLSFLPISRHRQYAPPPLSSPVTNISPAPSPSPTAVSGWTKMPVLSPEATPLGFSSRTPKMPPLPPLHTLPPPPPNEDCSATVCTEP YTNTPPGSPCGCVLPMQVGLSVSVALYTFFPLVSELAQEIATGVFMKQSQVHIIGANAASQQPEKTIILVDLVPLGERFDNTTAFFIYQRFWHKQVVINP SFFGDYEVLYVRYLGLPPSPHLAPSGIAIIDDGPYSGDDNNARTIKPLGVDVHRKHKNGLGHGVIAIIALSGVVALVLFSAVAWALLFRHRDRASQSETV LQPLPPSVVKPSGIAGSLVGSGLSSASLSFGSSIPAYAGSAKTFSTSDIERATNSFDASRILGEGGFGRVYCGVLEDGTKVAIKVLKRDDQQGGREFLAE VEMLSRLHHRNLVKLIGICTEERSRSLVYELIPNGSVESHLHGVDKGSASLDWDARIKIALGAARGLAYLHEDSSPCVIHRDFKSSNILLEHDFTPKVSD FGLARTALDEENQHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPPGQENLVTWARPLLTSKEGLKLIIDPSLGSDVPFDS VAKVAAIASMCVQPEVSNRPFMGEVVQALKLVSNECDEAKELDSRSSSQGLSIDMDAEVSAVSGQLRGAFQNHALVLNYDSEPDIERGLPVSDLLSTSVG YGREGCGSLRRCSSGPLRKVRGRELLRKMRLTGETVSERGTIFKMWPGSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56890			Protein kinase superfamily pro...		Potri.006G152000 [exp]	0	1
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Potri.001G241300 [exp]	1.41	0.9425
AT5G62710			Leucine-rich repeat protein ki...		Potri.012G071100 [exp]	2.00	0.9294
AT4G02030			Vps51/Vps67 family (components...		Potri.002G196300 [exp]	4.24	0.9236
AT5G05570			transducin family protein / WD...		Potri.008G069700 [exp]	5.29	0.9115
AT4G02010			Protein kinase superfamily pro...		Potri.002G194700 [exp]	5.29	0.9199
AT5G26330			Cupredoxin superfamily protein...		Potri.008G151000 [exp]	7.07	0.9011
AT4G18640		MRH1	morphogenesis of root hair 1, ...		Potri.004G058100 [exp]	10.00	0.8884
AT5G51540			Zincin-like metalloproteases f...		Potri.015G129300 [exp]	10.24	0.9187
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Potri.001G218100 [exp]	10.24	0.8866
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Potri.015G123900 [exp]	10.72	0.8843

Compare expression of checked genes

Potri.006G152000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.