Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56900 852 / 0 C3HZnF CwfJ-like family protein / zinc finger (CCCH-type) family protein (.1), CwfJ-like family protein / zinc finger (CCCH-type) family protein (.2) AT1G56290 91 / 8e-19 CwfJ-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G415900 [exp] 87 / 1e-17 AT1G56290 768 / 0.0 CwfJ-like family protein (.1) Potri.017G031800 [exp] 43 / 0.0008 AT2G47680 1242 / 0.0 zinc finger (CCCH type) helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021589 [exp] 882 / 0 AT5G56900 803 / 0.0 CwfJ-like family protein / zinc finger (CCCH-type) family protein (.1), CwfJ-like family protein / zinc finger (CCCH-type) family protein (.2) Lus10008172 [exp] 93 / 9e-20 AT1G56290 509 / 3e-175 CwfJ-like family protein (.1) Lus10021219 [exp] 86 / 2e-17 AT1G56290 739 / 0.0 CwfJ-like family protein (.1) Lus10022209 [exp] 86 / 2e-17 AT1G56290 751 / 0.0 CwfJ-like family protein (.1) Lus10026902 [exp] 44 / 0.0003 AT4G31770 551 / 0.0 ARABIDOPSIS THALIANA DEBRANCHING ENZYME 1, debranching enzyme 1 (.1) Lus10019431 [exp] 43 / 0.0004 AT3G19360 266 / 2e-87 Zinc finger (CCCH-type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04676 [poplar] [flax] CwfJ_C_2 Protein similar to CwfJ C-terminus 2 CL0265 [poplar] [flax] HIT PF04677 [poplar] [flax] CwfJ_C_1 Protein similar to CwfJ C-terminus 1
Representative CDS sequence Show only first row Show all	>Potri.006G152100.1 pacid=42769510 polypeptide=Potri.006G152100.1.p locus=Potri.006G152100 ID=Potri.006G152100.1.v4.1 annot-version=v4.1 ATGTCTACTCCGAGAATTCTTCTTTGCGGTGACGTTTTAGGCCGGCTCAACCAGCTCTTCAAGCGTGTCCAATCGGTGAACAAATCGGCGGGCCCATTCG ATGCACTCTTTTGCGTGGGGCAGTTCTTTCCTGACTCCGCTGAGCAATTAGAGGAATTCACGGACTACATTGAAGGCGGCGGCGGCCGCTCTCAAATTCC TCTCCCCACCTACTTTATCGGCGACTACGGTGTCGCCGCTCCCAAAGTCCTCTCCACTGCTTCCAGAAACTCCGCCAATTTAGGCTTCAAAATGGACGGC TTTAAAATTTGTGATAACCTTTTCTGGCTTAGAGGCAGCGGCAAGTTCACTCTCCACGGTTTATCTGTTGTGTACTTATCCGGTAGGCAGTCATCAAATG GCCAACACTTTGGAACATACAGTCAAGATGATGTTGATGCGTTGCGAGCATTGGCCGAGGAACCTGGAGTTGTTGACTTGTTTTTAACTAATGAATGGCC CAGTGGTGTCACAAACAGAGCTTCTGCATCTGATATTCCTGCAGGATTCTTGGATACTACAGGTTCTGATTCTTCCGTATCTGAGTTAGTAGCAGAGATC AAACCACGCTACCACTTTGCAGGTACTAAGGGTGTTTTCTATGCTCGTGAACCTTACTCTAATGTTGATGCTGTGCATGTCACACGTTTCTTTGGTCTTG CTATGGTTGGAAACAAGGATAAGCAGAAATTTATCCACGCCATTTCTCCCACTCCGGCATCTACAATGTCTGCTGCTGAGATTAGCATGAAACCTCCAAA TACTACCTTATCTCCATACACATTAGTAGTAGATAAAACAGCTCTCGAAGAAGTCACAAAGAGGTCTACTGCTAGTGTGTCAGATTCACAATATTGGAGG TACGATGTCTCCCATAAACGACATAAATCTGGATCTGGGGAAGGCAATAAGCTATGCTTTAAATTTATATATTCCGGTTCATGTCCACGAGGAGAAAAGT GTAACTTCCAACATGACATGGATGCAAGGGAACAATACTTAGGAGGTGTTTGTCTTGATTTCCTTATCAAAGGAAAATGTGAAAGAGGTCCAGACTGCAA CTTTAAGCACAACTTGCAGAATGAAGGTGAGAGCCATTCTCGTAGGAGACGCGGCTCTGAAAATGATAATGGTAACAGGTCAAAAGAGTGTTGGTTTTGT TTGTCAAGCCCCAACGTGGAGTCACATCTAATCATTAGCATAGGAGAATTTTACTATTGTGCACTGCCTAAAGGTCCCCTTGTTCAAGATCATGTTCTGG TAATACCCATTGAGCATGCACCGTGTACCCTTTCACTAACTCAACAAAGTAACTCTGAGCTGGTAAAATTCCAGAACAGTCTCAAGTTATATTACAAGAA CCGAGGAAAGGAAGCTATTTTATTTGAGTGGATTTCCAAACGGAGTAGCCATGCTAATATTCAGGTTGTCCCTGTTCCATCAACCAAAGCAGCAGCAGTT CAAGATATATGTAACTTGGCTGCAGAAAAGTTGGGTTTTAAATTTGTGGTCATGAAGTTCAATAACAGTTCAGATGGGAGAGAATGGTTAAGGACGCAGT TCGATAGGAACTATAGTTTCTTCTATGTGGAACTCACAGAAGGTACAATACTGTCACATTCAGTTGAGGAGAATGAGAATTTTCCTGCCCAATTTGGACG CGAAGTTCTAGCAGGCTTGCTGAACATGCCGGAGAGGGCTGATTGGAGAAATTGTGCACTTGGCAAAGATGAGGAGACAAAAATGGCGGAAGAATTCAAG AAACAATTTGAAGAATTGGATCCAAATCAATGA
AA sequence Show only first row Show all	>Potri.006G152100.1 pacid=42769510 polypeptide=Potri.006G152100.1.p locus=Potri.006G152100 ID=Potri.006G152100.1.v4.1 annot-version=v4.1 MSTPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDALFCVGQFFPDSAEQLEEFTDYIEGGGGRSQIPLPTYFIGDYGVAAPKVLSTASRNSANLGFKMDG FKICDNLFWLRGSGKFTLHGLSVVYLSGRQSSNGQHFGTYSQDDVDALRALAEEPGVVDLFLTNEWPSGVTNRASASDIPAGFLDTTGSDSSVSELVAEI KPRYHFAGTKGVFYAREPYSNVDAVHVTRFFGLAMVGNKDKQKFIHAISPTPASTMSAAEISMKPPNTTLSPYTLVVDKTALEEVTKRSTASVSDSQYWR YDVSHKRHKSGSGEGNKLCFKFIYSGSCPRGEKCNFQHDMDAREQYLGGVCLDFLIKGKCERGPDCNFKHNLQNEGESHSRRRRGSENDNGNRSKECWFC LSSPNVESHLIISIGEFYYCALPKGPLVQDHVLVIPIEHAPCTLSLTQQSNSELVKFQNSLKLYYKNRGKEAILFEWISKRSSHANIQVVPVPSTKAAAV QDICNLAAEKLGFKFVVMKFNNSSDGREWLRTQFDRNYSFFYVELTEGTILSHSVEENENFPAQFGREVLAGLLNMPERADWRNCALGKDEETKMAEEFK KQFEELDPNQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56900	C3HZnF		CwfJ-like family protein / zin...		Potri.006G152100 [exp]	0	1
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G028500 [exp]	4.00	0.8170
AT5G05460		AtENGase85A	Endo-beta-N-acetyglucosaminida...		Potri.010G184300 [exp]	7.41	0.7876
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Potri.003G064100 [exp]	16.24	0.8010
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Potri.008G117700 [exp]	17.94	0.7796
AT2G23450			Protein kinase superfamily pro...		Potri.007G034500 [exp]	18.16	0.7839
AT1G64385			unknown protein		Potri.001G092300 [exp]	20.71	0.7953
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.001G362300 [exp]	22.53	0.7896	Pt-MRP3.1
AT2G24360			Protein kinase superfamily pro...		Potri.018G001900 [exp]	25.92	0.7545
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.008G135500 [exp]	29.29	0.7677
					Potri.009G149000 [exp]	41.27	0.7794

Compare expression of checked genes

Potri.006G152100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.