Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56980 103 / 2e-25 unknown protein AT4G26130 83 / 2e-18 unknown protein AT2G26110 69 / 2e-13 Protein of unknown function (DUF761) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G228800 [exp] 92 / 2e-21 AT2G26110 142 / 5e-40 Protein of unknown function (DUF761) (.1) Potri.018G053000 [exp] 45 / 2e-05 AT2G26110 167 / 2e-49 Protein of unknown function (DUF761) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024988 [exp] 107 / 3e-27 AT2G26110 172 / 1e-51 Protein of unknown function (DUF761) (.1) Lus10025985 [exp] 75 / 1e-15 AT5G56980 82 / 4e-18 unknown protein Lus10014282 [exp] 74 / 2e-15 AT5G56980 84 / 1e-18 unknown protein Lus10026978 [exp] 66 / 9e-13 AT2G26110 122 / 2e-33 Protein of unknown function (DUF761) (.1) Lus10019517 [exp] 59 / 7e-10 AT2G26110 148 / 5e-43 Protein of unknown function (DUF761) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05553 [poplar] [flax] DUF761 Cotton fibre expressed protein PF14364 [poplar] [flax] DUF4408 Domain of unknown function (DUF4408)
Representative CDS sequence Show only first row Show all	>Potri.006G152200.1 pacid=42769655 polypeptide=Potri.006G152200.1.p locus=Potri.006G152200 ID=Potri.006G152200.1.v4.1 annot-version=v4.1 ATGGCAATCTCGATCTTCGCTTTCGTGACCAGCTGGTTAACACCGGGTTCACTCTTCCTCTTCCTGAATATTATGATTTTCACCATTGTTCTTGCTTCCC GTTATGGTACTCACAATAAACCAGTACACGAATACCAGCACCTCGCTCGAGCTCCTTCTCTTTTACAACGGGTCAAGTCCATCGACTACTTCTCCTTCTA CAATTTCCCACCTGCCCAGGAACCCCAAAACACTACCCAGGAACATGATCCTCCCCAGCTCGAAAGAGCCCCTTCTCTTTTACAACGGGTCAAGTCCATC GACTACTTATCCTTCTACAAATTCCCACCTGCCCAAGAACCCGAAAACACTACCCAGGAACATGATCCTCCCCAGCTCGAAAGAGCTCCTTCACTTTTAG AACGGGTCAAGTCCATCAACTTCTCTTCTTTATACTACAGTTCGGGACCGGAAGAAACAACCCAACGTCTCCCAGCTCAAACCAGGTCGGATGCCGATCC GGTTAGTCATGATCATGATCATCATGTGAAGAGGATCCAGTCGGAGCACATGGTGAGAGCTACGAAGAGGCAGGTGAAAATGAAGAAGTCGGCAAGCGAA AAGGCGGTGAGCTTGGATTTAGCGGAGGAGGTGGAGAGGGAGAAGGTTGAAAGAAGAAGGCCTGCAACGACAAGGGCTTCAGAGAAAACAGTGATGATTG GAGATGAAGAGGTTGATGCTAAAGCTGATGAAGAGGTTGATGCTAAAGCTGATGATTTTATCAACAGGTTCAAGCAACAGTTGAAGTTGCAGAGGCTGGA ATCTCTCCTGCGTTATAAGGAGATGCTCAAAGGAAAGCTAAGTATATAA
AA sequence Show only first row Show all	>Potri.006G152200.1 pacid=42769655 polypeptide=Potri.006G152200.1.p locus=Potri.006G152200 ID=Potri.006G152200.1.v4.1 annot-version=v4.1 MAISIFAFVTSWLTPGSLFLFLNIMIFTIVLASRYGTHNKPVHEYQHLARAPSLLQRVKSIDYFSFYNFPPAQEPQNTTQEHDPPQLERAPSLLQRVKSI DYLSFYKFPPAQEPENTTQEHDPPQLERAPSLLERVKSINFSSLYYSSGPEETTQRLPAQTRSDADPVSHDHDHHVKRIQSEHMVRATKRQVKMKKSASE KAVSLDLAEEVEREKVERRRPATTRASEKTVMIGDEEVDAKADEEVDAKADDFINRFKQQLKLQRLESLLRYKEMLKGKLSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56980			unknown protein		Potri.006G152200 [exp]	0	1
AT1G01490			Heavy metal transport/detoxifi...		Potri.017G147500 [exp]	1.00	0.9640
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G109100 [exp]	2.00	0.9267
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.007G111100 [exp]	3.46	0.8949
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.018G019700 [exp]	4.00	0.9150
					Potri.001G078000 [exp]	4.58	0.9230
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Potri.009G082900 [exp]	4.69	0.8992	PR1.1
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.003G041700 [exp]	6.70	0.9300
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.003G041400 [exp]	7.34	0.9347
					Potri.019G110602 [exp]	8.36	0.8868
AT5G07610			F-box family protein (.1)		Potri.001G181000 [exp]	9.53	0.8947

Compare expression of checked genes

Potri.006G152200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.