Plant FIBer expression Database

Potri.006G152300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.006G152300.2 pacid=42770030 polypeptide=Potri.006G152300.2.p locus=Potri.006G152300 ID=Potri.006G152300.2.v4.1 annot-version=v4.1
ATGATTATTAAAAAGGCTAAGAATATTAAGACTCTTAATTTTAATGAGTTTATTGGATCTTTAATTGCTTATGAAGGAAAAATCAAAGAGCTTAAGGTTA
ACAGTACTAATATCAAGAAGAAATCCTTAGCCTTGAAAGCCATAAATAAGGATGAGGATAGAAATGGATATAATGGTGAGGAAGATGAAGATCTAACCGT
AGTGACTAGAAACTTTGCCAAATATTTAAGGATTAAGAAGTATGGTACAAATCATAGAAATTTTAGAAGAAAAAAGGGTGACAATAGAGAATCTAGCAGC
CAGGATGCTATCTTTTGCTATGAATGCAAGAAGTCAAGTCATATGAAGTATTATTGCCCAAATGTCAAAAAGATATCAAAGTGTGATAAAAAGAAAAGGG
CAATAAAAGAGTCTACTTATGATGACAATGATGATAATACAACTTCTTCGAGTGATGATGATGATTCAAAATTAGAGAAATTAGTCAATCTATGTATGAT
AGCTAATATTGACATCACCAAATAA
AA sequence
>Potri.006G152300.2 pacid=42770030 polypeptide=Potri.006G152300.2.p locus=Potri.006G152300 ID=Potri.006G152300.2.v4.1 annot-version=v4.1
MIIKKAKNIKTLNFNEFIGSLIAYEGKIKELKVNSTNIKKKSLALKAINKDEDRNGYNGEEDEDLTVVTRNFAKYLRIKKYGTNHRNFRRKKGDNRESSS
QDAIFCYECKKSSHMKYYCPNVKKISKCDKKKRAIKESTYDDNDDNTTSSSDDDDSKLEKLVNLCMIANIDITK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.006G152300
[exp]
0 1
AT4G34780 SAUR-like auxin-responsive pro... Potri.017G052501
[exp]
8.24 0.6469
AT1G03390 HXXXD-type acyl-transferase fa... Potri.006G158400
[exp]
8.24 0.5882
AT2G32460 MYB ATMYB101, AtM1 ARABIDOPSIS THALIANA MYB 1, my... Potri.002G228700
[exp]
16.49 0.5967
AT5G48890 C2H2ZnF LATE LATE FLOWERING, C2H2-like zinc... Potri.002G238700
[exp]
27.20 0.5554
AT3G20190 Leucine-rich repeat protein ki... Potri.014G002700
[exp]
37.49 0.5550
AT3G05675 BTB/POZ domain-containing prot... Potri.016G069566
[exp]
49.69 0.4409
AT5G13930 ATCHS, TT4, CHS TRANSPARENT TESTA 4, CHALCONE ... Potri.003G195150
[exp]
69.85 0.4910
AT1G65480 FT FLOWERING LOCUS T, PEBP (phosp... Potri.008G077700
[exp]
72.20 0.5174 Pt-PNFT3.4
AT3G53310 B3 REM20 AP2/B3-like transcriptional fa... Potri.004G218101
[exp]
76.85 0.5609
AT1G05580 ATCHX23 cation/H+ exchanger 23, cation... Potri.007G111400
[exp]
81.24 0.4849 ATCHX23.1

Potri.006G152300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.