Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CKX3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56970 602 / 0 ATCKX3, CKX3 cytokinin oxidase 3 (.1) AT4G29740 543 / 0 ATCKX4, CKX4 cytokinin oxidase 4 (.1.2) AT2G19500 527 / 0 ATCKX2, CKX2 cytokinin oxidase 2 (.1) AT1G75450 524 / 0 ATCKX6, ATCKX5, CKX5 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) AT2G41510 473 / 3e-162 ATCKX1, CKX1 cytokinin oxidase/dehydrogenase 1 (.1) AT3G63440 458 / 4e-157 ATCKX6, CKX6, ATCKX7 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) AT5G21482 414 / 8e-140 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) AT5G06580 47 / 2e-05 FAD-linked oxidases family protein (.1) AT3G47930 47 / 3e-05 ATGLDH "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2) AT3G19820 43 / 0.0006 CBB1, EVE1, DW1, DIM1, DWF1 ENHANCED VERY-LOW-FLUENCE RESPONSES 1, DWARF 1, DIMINUTO 1, DIMINUTIA, CABBAGE 1, cell elongation protein / DWARF1 / DIMINUTO (DIM) (.1), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.2), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G066100 [exp] 629 / 0 AT5G56970 500 / 3e-173 cytokinin oxidase 3 (.1) Potri.005G232300 [exp] 545 / 0 AT1G75450 802 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.002G030500 [exp] 540 / 0 AT1G75450 785 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.006G047900 [exp] 473 / 7e-163 AT2G41510 772 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.016G044100 [exp] 469 / 2e-161 AT2G41510 752 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.003G203600 [exp] 466 / 3e-160 AT3G63440 799 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.001G020900 [exp] 463 / 4e-159 AT3G63440 800 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.006G221000 [exp] 397 / 4e-133 AT5G21482 674 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Potri.001G462600 [exp] 50 / 4e-06 AT1G01980 658 / 0.0 FAD-binding Berberine family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031188 [exp] 553 / 0 AT5G56970 484 / 1e-167 cytokinin oxidase 3 (.1) Lus10031200 [exp] 530 / 0 AT2G19500 464 / 1e-159 cytokinin oxidase 2 (.1) Lus10024289 [exp] 507 / 4e-176 AT1G75450 717 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10027611 [exp] 473 / 7e-164 AT5G56970 407 / 3e-138 cytokinin oxidase 3 (.1) Lus10031765 [exp] 431 / 4e-143 AT1G16560 496 / 2e-171 Per1-like family protein (.1.2.3.4) Lus10003845 [exp] 412 / 1e-140 AT1G75450 578 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10026471 [exp] 399 / 6e-134 AT5G21482 655 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Lus10005317 [exp] 311 / 3e-101 AT3G63440 536 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10039574 [exp] 310 / 9e-100 AT3G63440 544 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10035433 [exp] 290 / 8e-94 AT2G41510 424 / 8e-146 cytokinin oxidase/dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF09265 [poplar] [flax] Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Representative CDS sequence Show only first row Show all	>Potri.006G152500.1 pacid=42767191 polypeptide=Potri.006G152500.1.p locus=Potri.006G152500 ID=Potri.006G152500.1.v4.1 annot-version=v4.1 ATGGCTGAGAATCCTACCATCACAATATGTCTTATGGCAATTCTTTTTATAACTCGCTTAGCATCCACCCTTGGAAAATCCAAGTCATGGACTGGTCTTT TACCTCCTCAGATCCAAACCCTTGATTTCGCACGTCATCTTCATGTTGAACCCGATGCCATCAAATCAGTCTCTTCTGATTACGGTAACATCGTCCATGA AAATCCAGCCGCAGTTCTTTATCCATCCTCAATAGAAGATATAACGAGCTTAATAAAATTCTCGTACAATAACTACACCCCTTTTACTGTAGCAGCCAGG GGCCACGGCCATTCTGTTGGGGGACAGGCTATGGCTTCTAATGGAGTAGTAGTGGATATGACGAGTCTAAGGAATCATAAAAATGGGACTGGAATTACTG TCTCAAAATGCCCTTCATTGGGTTTCTATGCCGATGTTGGAGGTGAGCAGCTATGGATTGATGTTTTGCATTCCACCATGGAACATGGATTTGCTCCGGT GTCATGGACAGACTACTTGTACCTTAGCGTTGGTGGGACTCTCTCAAATGCTGGAATTAGCGGAACAACATTTCGGTACGGCCCTCAGATTAGCAATGTC TATGAAATGGATGTTGTTACCGGGAAAGGAGAACTGGTTACCTGCTCTTCACACACGAATTCTGAGCTATTTTATGCTGTTCTAGGAGGTTTAGGACAGT TTGGAATTATAACTAGAGCAAGAATAGCTTTAGAGCCAGCACCAAAGAGGGTGAAGTGGGTGCGAATGCTTTACAGCGATTTTTCTGCTTTTACAAGAGA CCAAGAACGTTTAATCTCAATCAATGGAAGGAAGCAGAAGAATGCACTCGACTATTTGGAAGGTTCACTTCTCATGGCTCAAGGACCTCCAAATAATTGG AGATCCTCCTTCTTCCCATCATCCGATATCCCTAAAATAATGTCCCTGGTAACCCAACATGCCATCATCTACTGTCTAGAAGTAGCCAAATATTATGATG ATGGGACCAGACACATTGTTGACAAGGATCTGCAACAATTGCTCAAGGGTTTAAGCTTCGTTGCCGGATTTATGTTTGAGAAAGATGTTTCCTTTGTGGA TTTTCTAAATAGAGTCCGAAGTGGAGAGCAAAAGCTTCATTCGCAAGGATTATGGGATGTTCCTCATCCATGGTTAAATCTCTTCCTGCCAAAATCTCGT ATTCTGGAGTTCAACAAGGGTGTTTTCCATGACCTTGTCCTTAAGCGTAATATTACGACTGGAGTCGTTCTTTTTTACCCTATGAATAGAAAAAAATGGG ATGATAAAATGTCCGCGGTTATACCAGAAGAAGATATTTTCTATACCGTGGGATTCTTGCACTCAAGCGGGTTTAATGACTGGCAAGCCTATGATCATCA GAACAAGGACATATTGAAGTTCTGTGACAAAGCTGGTATTGAGATTAAGCAGTACTTACCCCTTTACAATAGTAATAAAGAATGGATTAATCATTTCGGA TCGAAATGGAGAAATTTTCGAGAGAGAAAAGCTCAGTTTGATCCAAAAATGATGCTGTCACCAGGGCAGAGAATCTTCAATGACATATAA
AA sequence Show only first row Show all	>Potri.006G152500.1 pacid=42767191 polypeptide=Potri.006G152500.1.p locus=Potri.006G152500 ID=Potri.006G152500.1.v4.1 annot-version=v4.1 MAENPTITICLMAILFITRLASTLGKSKSWTGLLPPQIQTLDFARHLHVEPDAIKSVSSDYGNIVHENPAAVLYPSSIEDITSLIKFSYNNYTPFTVAAR GHGHSVGGQAMASNGVVVDMTSLRNHKNGTGITVSKCPSLGFYADVGGEQLWIDVLHSTMEHGFAPVSWTDYLYLSVGGTLSNAGISGTTFRYGPQISNV YEMDVVTGKGELVTCSSHTNSELFYAVLGGLGQFGIITRARIALEPAPKRVKWVRMLYSDFSAFTRDQERLISINGRKQKNALDYLEGSLLMAQGPPNNW RSSFFPSSDIPKIMSLVTQHAIIYCLEVAKYYDDGTRHIVDKDLQQLLKGLSFVAGFMFEKDVSFVDFLNRVRSGEQKLHSQGLWDVPHPWLNLFLPKSR ILEFNKGVFHDLVLKRNITTGVVLFYPMNRKKWDDKMSAVIPEEDIFYTVGFLHSSGFNDWQAYDHQNKDILKFCDKAGIEIKQYLPLYNSNKEWINHFG SKWRNFRERKAQFDPKMMLSPGQRIFNDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56970		ATCKX3, CKX3	cytokinin oxidase 3 (.1)		Potri.006G152500 [exp]	0	1	CKX3.1
AT3G03480		CHAT	acetyl CoA:(Z)-3-hexen-1-ol ac...		Potri.001G447832 [exp]	3.74	0.8209
AT5G57420	AUX_IAA	IAA33	indole-3-acetic acid inducible...		Potri.006G166900 [exp]	10.29	0.7746
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Potri.016G049400 [exp]	13.74	0.7731	PGIP.3
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.011G153500 [exp]	13.85	0.7663
AT1G62500			Bifunctional inhibitor/lipid-t...		Potri.003G111300 [exp]	14.07	0.7315
AT2G25735			unknown protein		Potri.006G244200 [exp]	16.09	0.7363
AT1G62500			Bifunctional inhibitor/lipid-t...		Potri.008G135860 [exp]	16.30	0.6722
AT5G61820			unknown protein		Potri.015G108700 [exp]	32.17	0.7434
AT1G03230			Eukaryotic aspartyl protease f...		Potri.019G064700 [exp]	40.24	0.7228
AT4G23020			unknown protein		Potri.003G121100 [exp]	51.17	0.6549

Compare expression of checked genes

Potri.006G152500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.