Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29240 472 / 3e-166 Leucine-rich repeat (LRR) family protein (.1) AT2G19780 464 / 3e-163 Leucine-rich repeat (LRR) family protein (.1) AT3G24480 311 / 8e-102 Leucine-rich repeat (LRR) family protein (.1) AT4G28380 298 / 2e-98 Leucine-rich repeat (LRR) family protein (.1) AT1G62440 311 / 3e-98 LRX2 leucine-rich repeat/extensin 2 (.1) AT3G22800 299 / 2e-97 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 303 / 1e-95 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT4G18670 303 / 3e-95 Leucine-rich repeat (LRR) family protein (.1) AT5G25550 289 / 5e-94 Leucine-rich repeat (LRR) family protein (.1) AT4G33970 293 / 1e-92 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G083100 [exp] 307 / 7e-102 AT3G22800 447 / 2e-156 Leucine-rich repeat (LRR) family protein (.1) Potri.014G036700 [exp] 312 / 3e-101 AT2G15880 502 / 1e-170 Leucine-rich repeat (LRR) family protein (.1) Potri.018G075900 [exp] 310 / 3e-99 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G245600 [exp] 306 / 3e-99 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.007G139200 [exp] 301 / 5e-99 AT4G28380 503 / 9e-179 Leucine-rich repeat (LRR) family protein (.1) Potri.006G081200 [exp] 312 / 2e-98 AT1G62440 553 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.018G151000 [exp] 303 / 5e-98 AT1G62440 533 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.006G158814 [exp] 303 / 6e-98 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083000 [exp] 298 / 9e-98 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012929 [exp] 513 / 0 AT4G29240 459 / 1e-160 Leucine-rich repeat (LRR) family protein (.1) Lus10037905 [exp] 311 / 2e-102 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10017727 [exp] 311 / 3e-99 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10039362 [exp] 295 / 6e-97 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10033672 [exp] 291 / 3e-95 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) Lus10028097 [exp] 288 / 3e-92 AT1G62440 466 / 7e-157 leucine-rich repeat/extensin 2 (.1) Lus10021001 [exp] 287 / 1e-90 AT3G19020 490 / 1e-165 Leucine-rich repeat (LRR) family protein (.1) Lus10041190 [exp] 275 / 2e-88 AT3G22800 421 / 3e-145 Leucine-rich repeat (LRR) family protein (.1) Lus10039363 [exp] 273 / 4e-86 AT3G22800 447 / 1e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10006611 [exp] 267 / 2e-85 AT3G22800 434 / 3e-150 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G152800.1 pacid=42768052 polypeptide=Potri.006G152800.1.p locus=Potri.006G152800 ID=Potri.006G152800.1.v4.1 annot-version=v4.1 ATGATGGAGAAGAGCTGGCTTCTGGCTTTTTCCCTCTTCCTCCAAATAATCCCAAGGGAAGCCGCTTTTGGTATTGGTGGCGGTGTGGGTGTTGGGATTG GCAATGCAGGTGGTGGTGTGTGGATCGGTGGTGGGATCAGAAGTTCTCCTACCCCATCACCCGGGTCTTCAGTTTCAAACCCGAACAGCGCTTACGCTGC TCTTCAATCATGGAAATCAGCCATCACAGATGACCCATTGAAGGTTTTGGACACTTGGGTTGGCACCGATGTTTGTGCGTATAAAGGAGTCTTCTGTGCA GATCCACAAGATGACGGCCCGGGTTCAGTTGTTGTAGGCATAGATCTCAACCACGCGAATCTCCAGGGCACTCTTGTCAAAGAAATCTCTGTCCTCACAG ACTTGTCTCTCCTTCATCTCAACAGTAACAGGTTTTCTGGCACACTACCTGATACTTTCAAGGACCTCATTTCTCTTCAAGAGTTGGACCTGAGTAACAA CCATTTTTCAGGTCCCTTCCCAACGGTCACTCTATACATTCCAAATCTCATGTATTTAGACCTCAGATTCAACAGCTTTTCAGGGCCTATACCTGAAGAT GTTTTCAACAAGAAACTTGATGCAATTTTTCTCAACAATAACCAATTTGATAGCCAGATTCCTCAAAATCTGGGCAGCTCTCCTGCTTCAGTGATAAACT TGGCAAATAACAAGCTCAGTGGAAACATTCCAGCTAGTTTTGGGTTGATGAGCTCCAAAGTGAAGGAGATTTTGTTTCTCAATAATCAGTTGACAGGCTG CATTCCTCAGGGAGTTGGGCTGTTCACAGAGATGCAAGTCTTGGATGTGAGCTTCAATTCACTGATGGGTCATTTACCGGACACAATTTCTTGCTTGAAT CAGATCGAAGTCCTGAATCTGGCACACAACAAGCTATCTGGGCAAGTACCAGAACTGGTTTGTTCTCTGAGAAGCCTTGTTAATCTGACAGTTGCCTCAA ATTTCTTTTCTGGGTTTAGCCAAGATTGTGCCAAGTTGTTCTTCAGAAATGTAGGTTTTGATTTCTCGTTGAATTGCATTCCTGGAAGAGACATGCAGAG GCCTCAACCAGAGTGTAGTGTGATACCAGGAGGAGGATTGAGTTGTCTCAGAATCCCTTCCGCTCAACCTCTTATTTGTGGATCATTGCCGAAGACATTA GAAGCAAATATAAGCCCATCTTCTCCATGA
AA sequence Show only first row Show all	>Potri.006G152800.1 pacid=42768052 polypeptide=Potri.006G152800.1.p locus=Potri.006G152800 ID=Potri.006G152800.1.v4.1 annot-version=v4.1 MMEKSWLLAFSLFLQIIPREAAFGIGGGVGVGIGNAGGGVWIGGGIRSSPTPSPGSSVSNPNSAYAALQSWKSAITDDPLKVLDTWVGTDVCAYKGVFCA DPQDDGPGSVVVGIDLNHANLQGTLVKEISVLTDLSLLHLNSNRFSGTLPDTFKDLISLQELDLSNNHFSGPFPTVTLYIPNLMYLDLRFNSFSGPIPED VFNKKLDAIFLNNNQFDSQIPQNLGSSPASVINLANNKLSGNIPASFGLMSSKVKEILFLNNQLTGCIPQGVGLFTEMQVLDVSFNSLMGHLPDTISCLN QIEVLNLAHNKLSGQVPELVCSLRSLVNLTVASNFFSGFSQDCAKLFFRNVGFDFSLNCIPGRDMQRPQPECSVIPGGGLSCLRIPSAQPLICGSLPKTL EANISPSSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29240			Leucine-rich repeat (LRR) fami...		Potri.006G152800 [exp]	0	1
AT3G51850		CPK13	calcium-dependent protein kina...		Potri.016G117200 [exp]	6.70	0.9049	CPK13.2
AT5G04160			Nucleotide-sugar transporter f...		Potri.006G046600 [exp]	6.92	0.9073
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Potri.006G121700 [exp]	10.24	0.8933	Pt-TIP2.7
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Potri.003G085200 [exp]	11.78	0.9106	Pt-NPSN11.1
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Potri.002G093100 [exp]	11.83	0.8989	Pt-SAH7.1
AT2G22260			oxidoreductase, 2OG-Fe(II) oxy...		Potri.006G004500 [exp]	14.69	0.8915
AT3G16200			unknown protein		Potri.001G186200 [exp]	17.88	0.8809
AT5G50460			secE/sec61-gamma protein trans...		Potri.001G329400 [exp]	20.61	0.8936
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Potri.008G061000 [exp]	20.90	0.8751
AT1G20530			Protein of unknown function (D...		Potri.005G249400 [exp]	28.46	0.8935

Compare expression of checked genes

Potri.006G152800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.