Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29260 292 / 3e-100 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G29270 276 / 7e-94 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G51260 261 / 3e-88 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G25150 259 / 3e-87 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT2G38600 198 / 2e-63 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G44020 180 / 5e-56 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT1G04040 180 / 5e-56 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G24770 161 / 8e-49 ATVSP2, VSP2 vegetative storage protein 2 (.1.2) AT5G24780 157 / 3e-47 ATVSP1, ATVSP, VSP1 vegetative storage protein 1 (.1.2) AT2G39920 73 / 4e-15 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G232900 [exp] 260 / 2e-87 AT5G51260 346 / 3e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.001G191000 [exp] 249 / 4e-83 AT4G25150 259 / 8e-87 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.002G257700 [exp] 197 / 6e-63 AT1G04040 317 / 1e-109 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.016G139700 [exp] 194 / 1e-61 AT2G38600 347 / 1e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.010G066500 [exp] 185 / 3e-58 AT1G04040 285 / 5e-97 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.006G110900 [exp] 183 / 6e-58 AT2G38600 322 / 2e-112 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.010G193500 [exp] 89 / 1e-20 AT2G39920 195 / 1e-60 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011140 [exp] 266 / 6e-90 AT4G29270 251 / 8e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10043042 [exp] 266 / 1e-89 AT4G29270 251 / 7e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10013478 [exp] 243 / 8e-81 AT4G25150 301 / 1e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10007939 [exp] 243 / 1e-80 AT4G25150 300 / 5e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10014968 [exp] 238 / 1e-78 AT4G29260 231 / 1e-75 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10011774 [exp] 189 / 1e-59 AT1G04040 272 / 8e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10023731 [exp] 188 / 3e-59 AT1G04040 273 / 3e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10017060 [exp] 162 / 5e-50 AT2G38600 216 / 2e-71 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10006849 [exp] 110 / 3e-30 AT4G25150 121 / 9e-35 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10038847 [exp] 103 / 2e-27 AT5G51260 97 / 2e-25 HAD superfamily, subfamily IIIB acid phosphatase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF03767 [poplar] [flax] Acid_phosphat_B HAD superfamily, subfamily IIIB (Acid phosphatase)
Representative CDS sequence Show only first row Show all	>Potri.006G152900.1 pacid=42770708 polypeptide=Potri.006G152900.1.p locus=Potri.006G152900 ID=Potri.006G152900.1.v4.1 annot-version=v4.1 ATGACTAAATCCCAGCCGCTGCTTTCCCTTTTGCTCTCCATCTTCATCTCGGGAACCATTTCCCAATCAATCATTCAACTCTCCAGAGACCACGACGTTT ACTGCAACGGCTGGAGGTTCTCTGTGGAAACAAACGACGTTGGATACTGGGATCATGTGCCTTCCAGATGCGTGTCCTACGTGCAAGACTACATGACAGG AGATGGGTACCGCTCCGACAGTGAGGTTGCTGCCTCCTACGCGCTTGGTTTCGCTAAGACGGTAGAGATTGCGGGGGACGGGAAGGATGCTTGGGTCTTT GATGTCGATGAGACTCTGCTATCCAATCTGCCCTACTATGCTGTACATGGATTCGGATCTGAACCCTTTGATGAATTATCTTTTGACGAGTGGGTGGATT TAGCCAAGGCACCTGCTTTACAAGCAAGTCTGAATTTGTACAAGGAGCTAAAGCAGCTGGGATTCACTGTATTTATGCTAACCGGGCGGAGTGAACATCA AAGGAATGCCACTGCAAAAAATCTTCAATTGGAAGGATACAGTGACTGGGAAAGGCTGATTTTGAGGGAGAGCTCAGATCAGGGAAAACCAGCGACTTTT TACAAATCCCAGAGGAGATTGGAGTTGGTAAATGAAGGATACAGGATTCATGGGAACTCCGGTGATCAGTGGAGTGACTTGTTTGGCTTTGCTGTTTCAG AGAGGTCCTTTAAACTCCCAAATCCACTATATTACATTCCATAA
AA sequence Show only first row Show all	>Potri.006G152900.1 pacid=42770708 polypeptide=Potri.006G152900.1.p locus=Potri.006G152900 ID=Potri.006G152900.1.v4.1 annot-version=v4.1 MTKSQPLLSLLLSIFISGTISQSIIQLSRDHDVYCNGWRFSVETNDVGYWDHVPSRCVSYVQDYMTGDGYRSDSEVAASYALGFAKTVEIAGDGKDAWVF DVDETLLSNLPYYAVHGFGSEPFDELSFDEWVDLAKAPALQASLNLYKELKQLGFTVFMLTGRSEHQRNATAKNLQLEGYSDWERLILRESSDQGKPATF YKSQRRLELVNEGYRIHGNSGDQWSDLFGFAVSERSFKLPNPLYYIP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29260			HAD superfamily, subfamily III...		Potri.006G152900 [exp]	0	1
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Potri.014G024950 [exp]	2.64	0.8616
AT1G34420			leucine-rich repeat transmembr...		Potri.019G084700 [exp]	2.82	0.8907
AT5G59910		HTB4	Histone superfamily protein (....		Potri.008G030400 [exp]	3.87	0.8685
AT4G35220			Cyclase family protein (.1)		Potri.001G301501 [exp]	6.63	0.8720
AT1G62600			Flavin-binding monooxygenase f...		Potri.001G121100 [exp]	7.21	0.8539
AT4G20030			RNA-binding (RRM/RBD/RNP motif...		Potri.003G074900 [exp]	10.95	0.8980
AT2G44410			RING/U-box superfamily protein...		Potri.009G023300 [exp]	14.38	0.8605
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Potri.008G164900 [exp]	15.09	0.8570
AT3G02910			AIG2-like (avirulence induced ...		Potri.019G041100 [exp]	15.55	0.8584
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Potri.010G073700 [exp]	16.12	0.8590

Compare expression of checked genes

Potri.006G152900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.