Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29330 355 / 8e-125 DER1 DERLIN-1 (.1) AT4G04860 132 / 9e-38 DER2.2 DERLIN-2.2 (.1) AT4G21810 129 / 2e-36 DER2.1 DERLIN-2.1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G233200 [exp] 312 / 1e-107 AT4G29330 293 / 4e-100 DERLIN-1 (.1) Potri.004G233100 [exp] 311 / 2e-107 AT4G29330 293 / 8e-100 DERLIN-1 (.1) Potri.011G000900 [exp] 136 / 4e-39 AT4G04860 410 / 5e-147 DERLIN-2.2 (.1) Potri.004G018200 [exp] 132 / 1e-37 AT4G04860 410 / 7e-147 DERLIN-2.2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012934 [exp] 343 / 2e-119 AT4G29330 347 / 2e-120 DERLIN-1 (.1) Lus10034990 [exp] 339 / 3e-118 AT4G29330 347 / 2e-121 DERLIN-1 (.1) Lus10018347 [exp] 139 / 3e-40 AT4G04860 446 / 2e-161 DERLIN-2.2 (.1) Lus10020053 [exp] 135 / 1e-38 AT4G04860 437 / 1e-157 DERLIN-2.2 (.1) Lus10006771 [exp] 135 / 1e-38 AT4G04860 437 / 6e-158 DERLIN-2.2 (.1) Lus10007664 [exp] 97 / 4e-24 AT4G04860 375 / 1e-133 DERLIN-2.2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [poplar] [flax] Rhomboid-like PF04511 [poplar] [flax] DER1 Der1-like family
Representative CDS sequence Show only first row Show all	>Potri.006G153000.1 pacid=42768818 polypeptide=Potri.006G153000.1.p locus=Potri.006G153000 ID=Potri.006G153000.1.v4.1 annot-version=v4.1 ATGTCTTCTCCTGCCGAGTACTACAAGTCTCTTCCACCTATAAGCAAGGCTTATGGGACCTTGTGCCTGTTTCTCACCACAGCTGTTCAATTTGGACTTC TTTATTTGCCGGATATTGCATTGATGTATAAACCTGTGTTCTCGAGCTTTCAGGTATGGAGGCTGATCACAACCTTCTTTTTCCTTGGGAATTTCTCTAT CAATTTTGGAATTCGCCTCTTAATGATAGCAAGATATGGAGTCCAGTTGGAGAAAGGGCCGTTTGAAAGGCGTACAGCGGATTTCTTGTGGATGATGATC TTTGGAGCTCTATCATTATTGGTACTTTCTGCGATCCCCATTTTTTGGAGCCCTTTCTTGGGGATATCACTTGTGTTCATGCTTCTCTATGTTTGGAGTA GAGAATTTCCAAATGCCCAAATCAACATATATGGGCTTGTAACTCTTAAGGCCTTCTATCTGCCATGGGCGATGCTTGCTTTGGATGTTATTTTCGGTGC ACCTCTTGTGCCAGATCTCCTGGGAATTATAGCAGGGCATTTATATTACTTCTTGACTGTGTTGCATCCTCTTGCAACTGGAAACATCTTATTAAGAACC CCCAGATGGGTAAATAAGCTGGTTGCAAGGTGGAGAATAGGAGCCCCAACCCCAACGTACAATAGTGCACAGCCTGACAGAACTACTCAAGCGGCTGACA GCACTACAAGTGCTGCTTTCAGAGGGAGATCTTATCGTCTAAATGATTAG
AA sequence Show only first row Show all	>Potri.006G153000.1 pacid=42768818 polypeptide=Potri.006G153000.1.p locus=Potri.006G153000 ID=Potri.006G153000.1.v4.1 annot-version=v4.1 MSSPAEYYKSLPPISKAYGTLCLFLTTAVQFGLLYLPDIALMYKPVFSSFQVWRLITTFFFLGNFSINFGIRLLMIARYGVQLEKGPFERRTADFLWMMI FGALSLLVLSAIPIFWSPFLGISLVFMLLYVWSREFPNAQINIYGLVTLKAFYLPWAMLALDVIFGAPLVPDLLGIIAGHLYYFLTVLHPLATGNILLRT PRWVNKLVARWRIGAPTPTYNSAQPDRTTQAADSTTSAAFRGRSYRLND

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29330		DER1	DERLIN-1 (.1)		Potri.006G153000 [exp]	0	1
AT5G64510		TIN1	tunicamycin induced 1, unknown...		Potri.009G081500 [exp]	3.46	0.9495
AT3G45180			Ubiquitin-like superfamily pro...		Potri.004G211600 [exp]	4.58	0.9566
AT4G27940		ATMTM1	ARABIDOPSIS MANGANESE TRACKING...		Potri.015G022700 [exp]	6.63	0.9215
AT1G23100			GroES-like family protein (.1)		Potri.008G130500 [exp]	7.14	0.9531
AT5G47830			unknown protein		Potri.014G024500 [exp]	8.06	0.9506
AT3G08970		TMS1, ATERDJ3A	THERMOSENSITIVE MALE STERILE 1...		Potri.016G120000 [exp]	8.83	0.9546
AT2G45380			unknown protein		Potri.014G069100 [exp]	12.32	0.9514
AT5G49220			Protein of unknown function (D...		Potri.010G000700 [exp]	17.32	0.9438
AT2G32070			Polynucleotidyl transferase, r...		Potri.001G046700 [exp]	18.00	0.9297
AT5G49970		PDX3, ATPPOX	HOMOLOG OF YEAST PYRIDOXINE AU...		Potri.002G102600 [exp]	19.44	0.9177

Compare expression of checked genes

Potri.006G153000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.