Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29380 2099 / 0 AtVPS15 Arabidopsis thaliana vacuolar protein sorting 15, protein kinase family protein / WD-40 repeat family protein (.1) AT1G33770 57 / 7e-08 Protein kinase superfamily protein (.1) AT5G08590 54 / 5e-07 ASK2, SNRK2-1, SNRK2.1, SRK2G ARABIDOPSIS SKP1-LIKE1, ARABIDOPSIS SERINE/THREONINE KINASE 2, SNF1-related protein kinase 2.1 (.1) AT4G10010 53 / 1e-06 Protein kinase superfamily protein (.1) AT5G04510 52 / 2e-06 ATPDK1, PDK1 3'-phosphoinositide-dependent protein kinase 1 (.1.2) AT5G66880 52 / 2e-06 SNRK2-3, SNRK2.3, SRK2I SUCROSE NONFERMENTING 1 \(SNF1\)-RELATED PROTEIN KINASE 2-3, sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 (.1) AT5G63650 51 / 4e-06 SNRK2-5, SNRK2.5, SRK2H SNF1-RELATED PROTEIN KINASE 2H, SNF1-related protein kinase 2.5 (.1) AT1G03740 51 / 7e-06 Protein kinase superfamily protein (.1.2) AT5G01810 50 / 1e-05 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT3G50500 50 / 1e-05 SPK-2-2, SNRK2-2, SNRK2.2, SRK2D SNF1-RELATED PROTEIN KINASE 2-2, SNF1-related protein kinase 2.2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G002500 [exp] 57 / 7e-08 AT3G17510 631 / 0.0 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) Potri.013G130000 [exp] 56 / 2e-07 AT1G53050 690 / 0.0 Protein kinase superfamily protein (.1) Potri.010G071400 [exp] 54 / 5e-07 AT1G08650 298 / 1e-101 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Potri.013G100100 [exp] 53 / 2e-06 AT1G71530 722 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G166500 [exp] 52 / 2e-06 AT1G08650 287 / 2e-97 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Potri.T011001 [exp] 52 / 3e-06 AT5G63650 583 / 0.0 SNF1-RELATED PROTEIN KINASE 2H, SNF1-related protein kinase 2.5 (.1) Potri.T011000 [exp] 52 / 3e-06 AT5G63650 583 / 0.0 SNF1-RELATED PROTEIN KINASE 2H, SNF1-related protein kinase 2.5 (.1) Potri.004G138300 [exp] 51 / 3e-06 AT1G10940 577 / 0.0 SNF1-related protein kinase 2.4, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-4, ARABIDOPSIS SERINE/THREONINE KINASE 1, Protein kinase superfamily protein (.1.2) Potri.003G003700 [exp] 50 / 1e-05 AT1G09600 703 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043037 [exp] 2149 / 0 AT4G29380 1926 / 0.0 Arabidopsis thaliana vacuolar protein sorting 15, protein kinase family protein / WD-40 repeat family protein (.1) Lus10011134 [exp] 1863 / 0 AT4G29380 1582 / 0.0 Arabidopsis thaliana vacuolar protein sorting 15, protein kinase family protein / WD-40 repeat family protein (.1) Lus10011135 [exp] 412 / 2e-133 AT4G29380 438 / 4e-144 Arabidopsis thaliana vacuolar protein sorting 15, protein kinase family protein / WD-40 repeat family protein (.1) Lus10033684 [exp] 55 / 5e-07 AT1G53050 668 / 0.0 Protein kinase superfamily protein (.1) Lus10031651 [exp] 55 / 5e-07 AT1G53050 645 / 0.0 Protein kinase superfamily protein (.1) Lus10017448 [exp] 54 / 1e-06 AT3G10540 821 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Lus10038647 [exp] 53 / 1e-06 AT3G10540 813 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Lus10039836 [exp] 53 / 2e-06 AT1G53050 633 / 0.0 Protein kinase superfamily protein (.1) Lus10028834 [exp] 53 / 3e-06 AT3G10540 817 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Lus10001285 [exp] 52 / 5e-06 AT1G71530 648 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0020 [poplar] [flax] TPR PF02985 [poplar] [flax] HEAT HEAT repeat
Representative CDS sequence Show only first row Show all	>Potri.006G153100.1 pacid=42768795 polypeptide=Potri.006G153100.1.p locus=Potri.006G153100 ID=Potri.006G153100.1.v4.1 annot-version=v4.1 ATGGGAAACAAAATCGCGCGGACGACGCAGGCATCGGCATCAGAGTACTACCTGCACGACTTGCCGTCATCGTATAATTTGGTACTGAAGGAGGTGCTAG GCCGAGGCAGGTTCTTCAAGTCTATACTGTGCAAGCACGATGAGGGATTAGTTCTGGTCAAGGTTTATTTCAAGCGTGGTGATAACATTGATCTCACCGA CTACCACCGCCGTCTCATCAACATCAAGGAAACCTTCCGTGCTCTTGACCATCATCACGTCTGGCCCTTCCAGTTTTTTCAAGAAACAGATAAGGCAGCC TATCTTTTGAGGCAGTACTTCTTCAATAATCTTCATGATCGATTGAGTACTCGTCCTTTCCTCAGTCTCGTTGAAAAGAAGTGGTTGGCATTTCAGTTGC TTCTTGCGGTGAAACAGTGTCATGACAAGGGCATTTGTCATGGTGATATCAAATGCGAGAATGTGCTGGTTACTTCCTGGAATTGGCTTTATCTTGCTGA CTTCGCCTCATTTAAACCAACTTACATCCCTTATGATGATCCTTCGGATTTCTCTTTCTTCTTTGACACGGGAGGAAGAAGGCTCTGTTATCTTGCACCC GAGAGATTTTATGAGCATGGAGGCGAGGTGCAAGTTGCTCAAGATGCACCCCTGTTGCCGTCCATGGACATATTTGCTGTAGGGTGCGTAATTGCGGAAC TTTTTCTTGAGGGTCAGCAACTGTTTGAACTCTCCCAGCTTCTTGCTTATCGTAGAGGACAATACGATCCTAGCCAATATCTTGAAAAGATCCCAGATTC TGGAATCCGCAAGATGATACTTCATATGATCCAGTTGGAGCCTGAGGCACGTCTTTCTGCTGAAAGCTACCTACAAGATTATGCAGCTGTTGTGTTTCCA AGCTACTTCTCACCCTTTCTGCATAATTTTTACTGCTGCTGGAATCCACTTCATTCTGACATGAGGGTTGCAATATGCCAGAGTGTTTTCCATGAGATAC TTAAGCAAATGATGGGAAGCAGGACAAGTGAGGTGGCTGGCACCAGACGAGACGTGTTTGCAAATAGTTTGAATGGAAAACTATCAGAAGAGATGGTTGA AAAACAAAACTTGGACTCAACAAGTCATTGGAGAAACAGAGAGAGAATAGAAAATGGTTTAACTTGTCAACAGTACAATCTTCTTGGAGATATCAATAGC CTGCTCGGGGACGTAAAACAAAGCAGTGGGTATTATAGTGCGAAATTGATGCCTGAGAGTGCTCCTGGTTCTGAATTTTGCCAGGATCTAAAGCAATGCA GCACCAAATCTCCTGATGAGCTTCTTCAAACTATCTCAAATGCATTTAGGAGAAATGATCATCCATTTCTGAAAAAAATTACAGTGGATGATTTGAGTTC ATTGATGTCCGAGTATGACAGTCAATCAGATACCTTTGGTATGCCTTTTTTACCGTTACCTGAAGATAGCATGAAATGTGAAGGTATGGTTCTGATTGCC TCTCTGCTATGCTCTTGCATACGTAATGTCAAGTTGCCACATTTGAGGAGAGGAGCTATACTTTTATTGAAGTCTTGTTCATTATATATTGATGATGAAG ATCGCTTACAGCGTGTGCTGCCATATGTTATTGCAATGCTTTCGGATCCAGCAGCAATAGTGCGTTCTGCTGCCTTGGAAACCTTGTGTGACATTCTGCC TTTAGTTCGTGATTTTCCTCCTAGTGATGCAAAGATTTTCCCTGAGTATATTCTTCCAATGCTTTCCATGCTTCCTGATGATCCAGAGGAAAGTGTGAGA ATATGTTACGCCAGCAATATAGCGAAGCTGGCTTTAACTGCTTATGGGTTCTTGATTCATTCAATAGGCTTGAGCAAGGCAGGTGTTCTTGATGAAATGA GCTCACCACAGAATTCAATGGCATCATTTATTGAAAGACCTGGGCAGCTGCAGAGAGTAAATAATGATGCGCAGTTGTCACAGCTGAGGAAATCAATTGC TGAGGTTGTTCAGGAACTTGTCATGGGTCCAAAACAAACTCCAAATATCAGGAGAGCACTCCTTCAGGACATTGGCAATCTGTGCTGCTTCTTTGGCCAC AGACAAAGCAATGACTTTCTGTTACCAATCCTTCCTGCATTTCTCAATGATCGAGATGAGCAACTAAGGGCATTATTCTATAGCAAGATTGTATATGTCT GCTTCTTTGTGGGCCAAAGAAGTGTGGAAGAATATCTTTTACCTTACATTGATCAGGCTTTAAGTGATCAAACTGAGGTTGTCATTGTAAATGCATTGGA CTGCTTGGCAATTTTGTGTAAACGCGGCTTCCTACGGAAGCGGGTATTGCTTGAAATGATAGAGCGTGCCTTTCCATTGTTATGCTATCCTAGTCAATGG GTTAGAAGGTCAGCTGTCTCTTTCATTGCTGCCAGCAGTGAAAGTTTAGGAGCAGTAGATTCATATGTTTTCCTAGCACCAGTTATACGCCCGTTCCTTT GCAGACATCCAGCTTCTCTAGCTTCAGAGAAGTCTCTACTTTTATGTTTGGTTCCTCCGGTTTCAAGACAGGTGTTTTACCACGACTTAGAAAATGCCCG GAGTTCAGACATGTTAGAGAGACAGAGAAAAATATGGTACAATTCATCAGCCCAGTCAAAACAATGGGAACCTGAGGATTTGCTCAAGGGAGATGATAAG GAACCGAATTCAATGAAGAGTTGGCCTGAAAAGGAACCAAGTCCCGGGGATCAAAATCATGATGCTGATAGATTGGAACAGCCAGAGGATGGTGATGCAA AGTTAATAGCTATGGGCTTTATAGCCAATGCTTCCAGCAAAGTTGACATTCGTGATGCCCTGAGCTCAGAGAAGTTGCAATTCTCAGGTTGTATGTCCCC TCAGTTTAGTGGTGTGAATAGCTTTTTACATGATAAATCCTCAGAAGGCATACCCTTATACTCCTTTAGCATGGACAGGCGAGCAGTAAAATTTCCTCCA GCAACGTCTGATTCTTCGTTGCAAATGAATTCCCTTGCAATCAGTTCATCATACATGCCCTGGGTGGATCACGGAATTAAATCATTTAGCCTGGCTAGTT CTGTTCCTGCACCTAAGCTGGTTTCAGGTTCATTTAGCATTACTAATGGTTCTAAACCATTTTATAGAGTGGTACATGAACCAGAAAGCAGAGAAAATGA GCAAACATCATTCTTTAATGGTAAATATCAAGATGTGGGATTATATGGAACTTCAAAAGGAAGTTCTTTTACGGTGGAAGATGCCCCTCCAACTGATCTA ACTGGATTGCCGTTATTTGCACGGACTGCTTCAATTCCTGATTCAGGTTGGAAACCTCGTGGGGTGTTGGTTGCGCACTTGCAGGAGCACCGGTCTGCCA TCAATGACATTGCAGTTTCAAGTGATCATAGCGTTTTTGTGAGTGCATCTGATGATTCAACTATCAAGGTGTGGGATTCAAGAAAATTGGAGAAGGACAT CTCATTTAGATCAAGGCTAACTTATCACCTGGAGGGGAGTCGAGCGCTATGCACTGTTATGCTTCACAACATAGCTCAAGTTGTTGTTGGAGCATGTGAT GGCACAATTCATATGTTTTCTGTTGAACACATGTCCAGAGGCCTTGGTAATGTTGTTGAGAAGTATTCAGGGATTGCTGATATAAAAAAGAAGGATATCA AGGAAGGTGCCATTCTTAGTCTTTTGAACTACACCAGTGATAACAGTGATGGCCAGAGTGTTATGTACAGCACCCAAAATTGTGGGATCCATCTCTGGGA TATCAGGGCCAATTCAAACGCCTGGACATTAAAAGCAGTTCCTGAGGAAGGCTACATATCATCTCTGGTTACAGGTCCTTGTGGAAACTGGTTCGTCTCA GGCTCTTCCAGGGGTGTGCTAACACTTTGGGATCTGAGGTTCCTTATCCCTGTAAACTCATGGAAGTATTCTCATGTATGCCCTGTAGAGAAGATGTGCC TCTTTGTTCCTCCTCCAAATGTCACTGTAACCAGCACTGCAAGACCACTCATATATGTTGCTGCAGGGTCTAATGAAGTTTCTCTTTGGAATGCTGAGAC TGGGAGCTGCCACCAGGTCATGAGGGTTGCAAATTATGACAATGAAGAAATGTCTGATATACCATGGGCCTTGGCCAGGCCATCCAGTAAGACAAATCTT AAACTAGATGTGAGGCGGAATGTCAAACCAAAGTACAGAGTTGAGGAGCTTAATGAACCACCTCCTCGTTTTCCTGGTATTCGTGCGATGCTTCCCTTGC CAGGTGGTGATTTGTTGACTGGGGGAACTGATTTGAAGATACGTAGATGGGACCATTTCAGCCCTGACCGAAGCTATTGTATTTCTGGGCCAAATTTGAA TGGAGCTGGGAATGATAATCCGTATGAAACAAGGTCGAGTTTTGGAGTGCAAATTGTACAGGAGACAAAAAGGCGACATTTAACAGCCAAGTTGACAGCG AAGCAAGTTCTTGCAGCTGCAGCTACTGATTCTGCTGGTTGCCACCGAGATTCCATCCTCTCATTGGCTTCTGTCAAGTTGAACCAGAGACTTCTGATTT CAAGTAGCAGAGATGGGGCTATCAAGGTTTGGAAGTAA
AA sequence Show only first row Show all	>Potri.006G153100.1 pacid=42768795 polypeptide=Potri.006G153100.1.p locus=Potri.006G153100 ID=Potri.006G153100.1.v4.1 annot-version=v4.1 MGNKIARTTQASASEYYLHDLPSSYNLVLKEVLGRGRFFKSILCKHDEGLVLVKVYFKRGDNIDLTDYHRRLINIKETFRALDHHHVWPFQFFQETDKAA YLLRQYFFNNLHDRLSTRPFLSLVEKKWLAFQLLLAVKQCHDKGICHGDIKCENVLVTSWNWLYLADFASFKPTYIPYDDPSDFSFFFDTGGRRLCYLAP ERFYEHGGEVQVAQDAPLLPSMDIFAVGCVIAELFLEGQQLFELSQLLAYRRGQYDPSQYLEKIPDSGIRKMILHMIQLEPEARLSAESYLQDYAAVVFP SYFSPFLHNFYCCWNPLHSDMRVAICQSVFHEILKQMMGSRTSEVAGTRRDVFANSLNGKLSEEMVEKQNLDSTSHWRNRERIENGLTCQQYNLLGDINS LLGDVKQSSGYYSAKLMPESAPGSEFCQDLKQCSTKSPDELLQTISNAFRRNDHPFLKKITVDDLSSLMSEYDSQSDTFGMPFLPLPEDSMKCEGMVLIA SLLCSCIRNVKLPHLRRGAILLLKSCSLYIDDEDRLQRVLPYVIAMLSDPAAIVRSAALETLCDILPLVRDFPPSDAKIFPEYILPMLSMLPDDPEESVR ICYASNIAKLALTAYGFLIHSIGLSKAGVLDEMSSPQNSMASFIERPGQLQRVNNDAQLSQLRKSIAEVVQELVMGPKQTPNIRRALLQDIGNLCCFFGH RQSNDFLLPILPAFLNDRDEQLRALFYSKIVYVCFFVGQRSVEEYLLPYIDQALSDQTEVVIVNALDCLAILCKRGFLRKRVLLEMIERAFPLLCYPSQW VRRSAVSFIAASSESLGAVDSYVFLAPVIRPFLCRHPASLASEKSLLLCLVPPVSRQVFYHDLENARSSDMLERQRKIWYNSSAQSKQWEPEDLLKGDDK EPNSMKSWPEKEPSPGDQNHDADRLEQPEDGDAKLIAMGFIANASSKVDIRDALSSEKLQFSGCMSPQFSGVNSFLHDKSSEGIPLYSFSMDRRAVKFPP ATSDSSLQMNSLAISSSYMPWVDHGIKSFSLASSVPAPKLVSGSFSITNGSKPFYRVVHEPESRENEQTSFFNGKYQDVGLYGTSKGSSFTVEDAPPTDL TGLPLFARTASIPDSGWKPRGVLVAHLQEHRSAINDIAVSSDHSVFVSASDDSTIKVWDSRKLEKDISFRSRLTYHLEGSRALCTVMLHNIAQVVVGACD GTIHMFSVEHMSRGLGNVVEKYSGIADIKKKDIKEGAILSLLNYTSDNSDGQSVMYSTQNCGIHLWDIRANSNAWTLKAVPEEGYISSLVTGPCGNWFVS GSSRGVLTLWDLRFLIPVNSWKYSHVCPVEKMCLFVPPPNVTVTSTARPLIYVAAGSNEVSLWNAETGSCHQVMRVANYDNEEMSDIPWALARPSSKTNL KLDVRRNVKPKYRVEELNEPPPRFPGIRAMLPLPGGDLLTGGTDLKIRRWDHFSPDRSYCISGPNLNGAGNDNPYETRSSFGVQIVQETKRRHLTAKLTA KQVLAAAATDSAGCHRDSILSLASVKLNQRLLISSSRDGAIKVWK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Potri.006G153100 [exp]	0	1
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.001G417000 [exp]	1.00	0.8759
AT5G16680			RING/FYVE/PHD zinc finger supe...		Potri.013G077900 [exp]	4.00	0.8739
AT1G03750		SWI2, SNF2, CHR...	CHROMATIN REMODELING 9, switch...		Potri.017G012400 [exp]	4.24	0.8491	CHR912
AT4G15840			BTB/POZ domain-containing prot...		Potri.010G014000 [exp]	7.34	0.8154
AT5G55600			agenet domain-containing prote...		Potri.001G365800 [exp]	10.95	0.8494
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.012G077700 [exp]	13.26	0.8533
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.001G123400 [exp]	13.52	0.8534
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Potri.007G070100 [exp]	18.43	0.8157
AT1G09730			Cysteine proteinases superfami...		Potri.017G044000 [exp]	21.63	0.8319
AT1G50030		TOR	target of rapamycin (.1.2)		Potri.004G147800 [exp]	23.32	0.8331

Compare expression of checked genes

Potri.006G153100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.