Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19740 877 / 0 Peptidase M28 family protein (.1) AT3G54720 508 / 3e-171 MFO1, HPT, COP2, AMP1 PRIMORDIA TIMING, Multifolia, HAUPTLING, CONSTITUTIVE MORPHOGENESIS 2, ALTERED MERISTEM PROGRAM 1, Peptidase M28 family protein (.1) AT4G07670 333 / 2e-109 protease-associated (PA) domain-containing protein (.1), protease-associated (PA) domain-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G064300 [exp] 576 / 0 AT3G54720 803 / 0.0 PRIMORDIA TIMING, Multifolia, HAUPTLING, CONSTITUTIVE MORPHOGENESIS 2, ALTERED MERISTEM PROGRAM 1, Peptidase M28 family protein (.1) Potri.008G175400 [exp] 49 / 1e-05 AT1G67420 1062 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2) Potri.010G060500 [exp] 46 / 9e-05 AT1G67420 1085 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011133 [exp] 821 / 0 AT5G19740 806 / 0.0 Peptidase M28 family protein (.1) Lus10043036 [exp] 754 / 0 AT5G19740 745 / 0.0 Peptidase M28 family protein (.1) Lus10021090 [exp] 502 / 9e-171 AT3G54720 628 / 0.0 PRIMORDIA TIMING, Multifolia, HAUPTLING, CONSTITUTIVE MORPHOGENESIS 2, ALTERED MERISTEM PROGRAM 1, Peptidase M28 family protein (.1) Lus10017223 [exp] 494 / 5e-168 AT3G54720 630 / 0.0 PRIMORDIA TIMING, Multifolia, HAUPTLING, CONSTITUTIVE MORPHOGENESIS 2, ALTERED MERISTEM PROGRAM 1, Peptidase M28 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0364 [poplar] [flax] PF04253 [poplar] [flax] TFR_dimer Transferrin receptor-like dimerisation domain CL0035 [poplar] [flax] Peptidase_MH PF04389 [poplar] [flax] Peptidase_M28 Peptidase family M28
Representative CDS sequence Show only first row Show all	>Potri.006G153300.2 pacid=42769142 polypeptide=Potri.006G153350.1.p locus=Potri.006G153300 ID=Potri.006G153300.2.v4.1 annot-version=v4.1 ATGAAGGAGCAGTGGAGTATATCCCATAGCCATAACTACACAAAATTGAAGCACTCCATGATCAAGATAGCCATCGTTAGCTTCCTAGCAATAGGCATAG CAACTTCTTTCTCCTTTTTACTATCTTCTTCTCTACCCAAATCATATTATCATTCCCTCTACATATCCAACTCCATCTCTGACAATGCATCGATATCACA CGACCTCTACATGCTCACCCGCCGACCCCATGCTGCTGGAACAGAAGCCAACGCCCAAGCTGCGGCCTATGTTCTATCTACTCTCGTGTCATACAACATC GATTCCCACATCGTCTCCTATGATGTTTCATTGACTTATCCTATTTCACGATCCTTAATCTTAACACAACCAGAACCAGCATCAGAGCAATTACCAATCA CGTTTGATCTTCGTCAAGAGATTTATGATGGCGATCCATATGCTGACGTGGCCCATGAAGTCTTGCCCACTTTCCATGCCTATGCAAAGTCAGGTACAGT TCGTGGAGCTGTGGTTTATGCGAACTACGGGCGGGTGGAAGATTACAAGACATTAAAAGAAATGGGAGTGAATGTAACGGGGACTATTGTATTAGCAAGG TATGGAAAGATTTTCAGGGGAGACATCGTAAATAATGCATTTGAGGCAGGCGCAATAGGAGCAATTGTGTATACAGATAGGAAGGACTATGGGGGTGGAG GTGATGAGGGATGGTTTCCTAAGGCAAAGTGGATGCCACCAAGTGGAGTTCAGGTGGGATCTGTTTATGACGGGGCCGGTGACCCGAGCACACCTGGATG GCCGAGTATTCAAGGATGTGAAAGGATATCGGATGACGAAGTAGAGAAACAAGGCAATGTTCCTTTAATACCTTCATTGCCTGTATCAGCGGCTGACGGT GAAACAATCATGCGGTCTGTCGGTGGACAAGTGGCAAATGAAGACTGGCAAGGAAGCAAAGATAGTCCAACATATAGGCTCGGACCAGGGCCCGGGATTC TAAATCTTACTTATACTGGAAAGAAAGCTATAGAAACAATTCAGAATGTTATTGCTATAATCGAAGGAGTTGAGGAGCCGGATAGATTTGTGATTCTGGG TAATCATCGGGATGCATGGACATTTGGAGCAGTTGATCCCAATAGTGGAACCGCGGCATTGTTAGAGGTTGCCCGAAGACTGATGAAGCTACAAGAAAAA GGATGGAAACCTCGGAGAACAATTGTCTTGTGCAATTGGGATGCGGAAGAGTATGGCCTGATAGGATCGACTGAGTGGGTAGAAGACAATAGAGAACTCC TGACATCGAGGGCTGTTGCCTACTTGAATGTTGACTGTGCAGTCACCGGAGCCGGATTTCATGCTTCTGCAACACCTCAGCTGGACAAATTACTCGCGAA GACTACTCAGCAGGTTGGTGACCCAGATAACTCATCACAGACCATCTATGAATCATGGGTTGCTCCCGACAACTCTCCTACGATTGAGAGACTAGGTGGT GGAGGATCAGATTATGCAGCTTTTGTACAACATATTGGCATTGCATCGGCTGACGTCTCTTTTGGGAAAGGATATCCAGTATATCATTCAATGTATGACG ACTTTGTTTGGATGGAAAAGTTTGGGGACCCTATGTTTCGAAGACATATTGCTGTGGCGAGCGTCTGGGGTTTGACAGCTCTTCAGTTAGCAGATGAAGA ATTTCTGCCTTTCGACTATCTATCCTATGCATACGAGCTCCAGAAAAACGCAAAGGACTTGGAAGATGAGATATCGGATAAGGGCATAAGGCTTGCTCCC CTGTTCGAGTCCATTAAGAGACTAAGAGATGCAGCCACAAAAATAAACCAGGAGAGAAAGGCAATTGAAGAAAACAGAGTGTGGGCATGGAAGTTCAAGA AAGATCAAGTGAAGGTGAGAGAGATCAACGACAGGCTGATGATGGCGGAACGAGCATTTACAGACGCAGAAGGGCTTTCTGGGAGGTCATGGTACAAGCA TTTGATATATGCACCGTCAAAGCATGATGATTATGGATCGAGCTACTTTCCTGGAATAGACGACGCGATTGAAGAGGCGAGGAGTCTCAGCACGCCAGAG GCATGGCGCTCGGTACAGCACCAAGTTTGGAGGGTGTCAAGAGCTGTCAGACATGTCTCGCAAGTCCTCACTGGTGAATTGACTTGA
AA sequence Show only first row Show all	>Potri.006G153300.2 pacid=42769142 polypeptide=Potri.006G153350.1.p locus=Potri.006G153300 ID=Potri.006G153300.2.v4.1 annot-version=v4.1 MKEQWSISHSHNYTKLKHSMIKIAIVSFLAIGIATSFSFLLSSSLPKSYYHSLYISNSISDNASISHDLYMLTRRPHAAGTEANAQAAAYVLSTLVSYNI DSHIVSYDVSLTYPISRSLILTQPEPASEQLPITFDLRQEIYDGDPYADVAHEVLPTFHAYAKSGTVRGAVVYANYGRVEDYKTLKEMGVNVTGTIVLAR YGKIFRGDIVNNAFEAGAIGAIVYTDRKDYGGGGDEGWFPKAKWMPPSGVQVGSVYDGAGDPSTPGWPSIQGCERISDDEVEKQGNVPLIPSLPVSAADG ETIMRSVGGQVANEDWQGSKDSPTYRLGPGPGILNLTYTGKKAIETIQNVIAIIEGVEEPDRFVILGNHRDAWTFGAVDPNSGTAALLEVARRLMKLQEK GWKPRRTIVLCNWDAEEYGLIGSTEWVEDNRELLTSRAVAYLNVDCAVTGAGFHASATPQLDKLLAKTTQQVGDPDNSSQTIYESWVAPDNSPTIERLGG GGSDYAAFVQHIGIASADVSFGKGYPVYHSMYDDFVWMEKFGDPMFRRHIAVASVWGLTALQLADEEFLPFDYLSYAYELQKNAKDLEDEISDKGIRLAP LFESIKRLRDAATKINQERKAIEENRVWAWKFKKDQVKVREINDRLMMAERAFTDAEGLSGRSWYKHLIYAPSKHDDYGSSYFPGIDDAIEEARSLSTPE AWRSVQHQVWRVSRAVRHVSQVLTGELT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19740			Peptidase M28 family protein (...		Potri.006G153300 [exp]	0	1
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.011G091900 [exp]	16.43	0.7129	ARF6.4
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Potri.007G002200 [exp]	16.67	0.7252
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.003G030000 [exp]	21.90	0.7095
AT1G31910			GHMP kinase family protein (.1...		Potri.001G135500 [exp]	40.98	0.6558
AT4G38220		AQI	aquaporin interactor, Peptidas...		Potri.004G208100 [exp]	44.49	0.6264
AT4G27220			NB-ARC domain-containing disea...		Potri.001G425500 [exp]	64.80	0.6619
AT5G13300		AGD3, VAN3, SFC	ASCULAR NETWORK DEFECTIVE 3, S...		Potri.003G163200 [exp]	65.79	0.6193
AT4G27190			NB-ARC domain-containing disea...		Potri.001G422800 [exp]	65.92	0.6528	Pt-RGA-II24.59
AT1G30650	WRKY	ATWRKY14, AR411...	WRKY DNA-binding protein 14 (....		Potri.001G460600 [exp]	72.47	0.6466	Pt-WRKY14.2
AT5G53430		SET29, ATX5, SD...	SET domain group 29 (.1)		Potri.012G013900 [exp]	73.26	0.6722	SDG914

Compare expression of checked genes

Potri.006G153300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.