Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26180 475 / 4e-170 Mitochondrial substrate carrier family protein (.1) AT1G14560 362 / 4e-125 Mitochondrial substrate carrier family protein (.1) AT4G01100 202 / 2e-62 ADNT1 adenine nucleotide transporter 1 (.1.2) AT2G37890 170 / 3e-50 Mitochondrial substrate carrier family protein (.1) AT3G55640 165 / 2e-48 Mitochondrial substrate carrier family protein (.1) AT3G53940 162 / 5e-47 Mitochondrial substrate carrier family protein (.1) AT5G61810 158 / 1e-45 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT4G32400 157 / 8e-45 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT5G51050 157 / 4e-44 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT3G51870 149 / 5e-42 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G226300 [exp] 392 / 9e-137 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1) Potri.003G137500 [exp] 203 / 7e-63 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.001G094100 [exp] 202 / 3e-62 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 198 / 7e-61 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.014G095400 [exp] 198 / 1e-60 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.008G060900 [exp] 167 / 3e-49 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.016G103300 [exp] 167 / 5e-49 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.012G110700 [exp] 169 / 3e-48 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.010G197400 [exp] 162 / 3e-47 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008572 [exp] 572 / 0 AT4G26180 494 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10032690 [exp] 568 / 0 AT4G26180 493 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10013527 [exp] 376 / 2e-130 AT1G14560 428 / 5e-151 Mitochondrial substrate carrier family protein (.1) Lus10033947 [exp] 199 / 3e-61 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033948 [exp] 199 / 5e-61 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032365 [exp] 198 / 9e-61 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032364 [exp] 194 / 3e-59 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10004689 [exp] 167 / 6e-49 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10021497 [exp] 164 / 1e-47 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10022597 [exp] 159 / 1e-45 AT3G53940 486 / 3e-173 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.006G153600.1 pacid=42768697 polypeptide=Potri.006G153600.1.p locus=Potri.006G153600 ID=Potri.006G153600.1.v4.1 annot-version=v4.1 ATGGGTATGCTGTTAGATGAGATAATAGAGGCCATGCCTGTGTTTGCTAAAGAGTTAGTTGCTGGGGGTGTTGCTGGTGGCTTTGCAAAGACTGTTGTAG CTCCCCTTGAACGTGTCAAGATTTTGTTTCAGACCAGAAGAGATGAATTCAAGTCTGTTGGGCTGTTTGGATCCTTTAAAAAGATTTCACATACAGAGGG GATTATGGGTTTGTACAGAGGAAACGGTGCTAGTGTTGCACGAATTGTACCTTATGCTGCCCTGCATTACATGACTTATGAGCAATATCGTAGATGGATA ATCCTCAGTTTTCCTGATATTGGGAGGGGTCCTGTACTTGATCTCGTGGCAGGATCATTCGCTGGAGGAACAGCTGTGCTTCTTACATATCCTCTTGATT TGGTTAGAACAAAATTGGCTTACCAGATTGTCAGTTCATCAAAAGCGAATATTAATGGGGTAATTGGTATGGAACTAGTTTATAAAGGAATCCGTGATTG TTTCTCAAAGACTCTTAAGGAATCTGGGCTAAGAGGTCTCTATCGTGGTGTGGCTCCATCTCTTTATGGAATCTTCCCTTACGCTGGTTTGAAGTTTTAC TTCTATGAGGAGATGAAACGACATGTCCCTGAGGAGCACAAGAAAGATATTGTGGTGAAAATGGTATGCGGCTCTGTTGCTGGTTTATTGGGCCAGACCT TCACATACCCTCTTGATGTTGTTAGAAGGCAAATGCAGGTTCAAAGGCTATCGGTGTCGAATAGCGCAGAGTTAAAAGGAACCATGGAAACCCTTATTAT GATAATGCAGAAGCAGGGGTGGAAGCAATTATTTTCAGGGCTTAGCATCAACTACTTGAAGGTTGTCCCTTCCGTGGCGATTGGTTTTACAGTTTATGAT ATGATGAAAGCGAGCCTTAGAGTCCCATCACGAGATGTGATAGAAGCAGTGACTGACAAAAGAAATAGTCAACCGTCCCTTCATTCTTGA
AA sequence Show only first row Show all	>Potri.006G153600.1 pacid=42768697 polypeptide=Potri.006G153600.1.p locus=Potri.006G153600 ID=Potri.006G153600.1.v4.1 annot-version=v4.1 MGMLLDEIIEAMPVFAKELVAGGVAGGFAKTVVAPLERVKILFQTRRDEFKSVGLFGSFKKISHTEGIMGLYRGNGASVARIVPYAALHYMTYEQYRRWI ILSFPDIGRGPVLDLVAGSFAGGTAVLLTYPLDLVRTKLAYQIVSSSKANINGVIGMELVYKGIRDCFSKTLKESGLRGLYRGVAPSLYGIFPYAGLKFY FYEEMKRHVPEEHKKDIVVKMVCGSVAGLLGQTFTYPLDVVRRQMQVQRLSVSNSAELKGTMETLIMIMQKQGWKQLFSGLSINYLKVVPSVAIGFTVYD MMKASLRVPSRDVIEAVTDKRNSQPSLHS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26180			Mitochondrial substrate carrie...		Potri.006G153600 [exp]	0	1
AT4G24160			alpha/beta-Hydrolases superfam...		Potri.002G027300 [exp]	1.73	0.8785
AT1G57790			F-box family protein (.1)		Potri.006G212600 [exp]	6.00	0.8417
AT3G13780			SMAD/FHA domain-containing pro...		Potri.001G196700 [exp]	7.34	0.8249
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Potri.014G150600 [exp]	7.74	0.8327
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Potri.001G033200 [exp]	9.48	0.8341
					Potri.006G092300 [exp]	9.94	0.7603
AT1G14560			Mitochondrial substrate carrie...		Potri.006G226300 [exp]	18.70	0.8151
AT2G19260			RING/FYVE/PHD zinc finger supe...		Potri.006G277400 [exp]	19.89	0.8133
AT4G27020			unknown protein		Potri.011G137700 [exp]	19.89	0.8067
					Potri.018G123400 [exp]	21.02	0.8087

Compare expression of checked genes

Potri.006G153600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.