Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57340 391 / 6e-136 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) AT5G05750 275 / 2e-91 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G49060 216 / 2e-67 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) AT5G37380 72 / 7e-14 Chaperone DnaJ-domain superfamily protein (.1.2.3.4.5) AT2G22360 71 / 3e-13 DNAJ heat shock family protein (.1) AT3G17830 71 / 4e-13 Molecular chaperone Hsp40/DnaJ family protein (.1) AT4G19570 71 / 4e-13 Chaperone DnaJ-domain superfamily protein (.1) AT3G12170 69 / 4e-13 Chaperone DnaJ-domain superfamily protein (.1) AT3G06778 68 / 5e-13 Chaperone DnaJ-domain superfamily protein (.1) AT4G39960 69 / 1e-12 Molecular chaperone Hsp40/DnaJ family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G013200 [exp] 226 / 6e-71 AT5G49060 327 / 3e-110 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Potri.001G057200 [exp] 73 / 6e-14 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 72 / 1e-13 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.016G120000 [exp] 72 / 1e-13 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 72 / 1e-13 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G198000 [exp] 71 / 2e-13 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.014G122600 [exp] 71 / 2e-13 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.015G020200 [exp] 71 / 4e-13 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G073900 [exp] 70 / 5e-13 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019421 [exp] 445 / 4e-157 AT3G57340 408 / 3e-142 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10030079 [exp] 439 / 7e-155 AT3G57340 420 / 6e-147 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10043277 [exp] 433 / 1e-150 AT3G57340 408 / 2e-140 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10037502 [exp] 206 / 9e-64 AT5G49060 340 / 7e-116 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Lus10006515 [exp] 201 / 6e-62 AT5G49060 300 / 8e-101 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Lus10031336 [exp] 79 / 5e-16 AT3G17830 459 / 5e-158 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10014927 [exp] 77 / 3e-15 AT5G53150 535 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10038816 [exp] 77 / 4e-15 AT5G53150 540 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10011484 [exp] 76 / 8e-15 AT1G80030 638 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10031908 [exp] 75 / 1e-14 AT3G17830 457 / 3e-157 Molecular chaperone Hsp40/DnaJ family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF09320 [poplar] [flax] DUF1977 Domain of unknown function (DUF1977)
Representative CDS sequence Show only first row Show all	>Potri.006G153700.1 pacid=42768587 polypeptide=Potri.006G153700.1.p locus=Potri.006G153700 ID=Potri.006G153700.1.v4.1 annot-version=v4.1 ATGGATAGCAACAAAGACGATGCGTTGAAATGCTTGGAAATCGGCAAAGAAGCCCTCGAATCCGGTGATCGAAGCCGTGCTTTAAAATTCATCACCAAAG CTCGCCGCCTGGATCCTACTCTCGCCGTCGACGATCTCTTATCTGCGGCGGAAAAGGATGAGCCAAATAAAACGGCGGCTGCAAACATTAATAATGGGTC CACAACAGCCACGGCCTCAAACGAATCCAAAGTTCGCCAAAGGGGGTCATCATCATCATCATCATCATATACAGAGGAGCAAATTTCGATTGTGAGAGAA ATCAGGAAGAAGAAGAATTACTATGAGATTTTGGGATTGGAAAAGTCTTGCTCTGTAGAAGATGTTCGAAAAGCATATCGAAAACTATCACTGAAAGTCC ATCCTGATAAGAACAAGTCTCCTGGAGCTGAGGATGCATTTAAAGCTGTTTCGAAAGCGTTCCAGTGCCTTAGCAATGAAGAGAGCAGGAGCAAGTATGA TGTTACCGGAACTGAAGAGCCTCTCTACGAGAGACGCTCTTCCAGTCATCATCGTCATGGATATTATAATTATAACGATGATTTGGATCCTGACGAGATA TTCAGGCAATTCTTCTTTGGAGGTGGAATGAGGCCTGCCACCACCCAGTTTCGGAGTTTTAATTTTGGAGCAGGAATGGGTGGCCCTAGAACGGATCATA ATGGATCTGGCTTTAACTTCCGTGCATTGATTCAATTGCTCCCGGTTCTTCTTATTTTCCTTTTCAACTTTCTACCGTCATCTGAGCCTATTTATGCACT TTCCAGGTCCTATCCTTATGAGTACAGGTTTACTACGCAGAGAGGGGTTAATTTTTATGTGAAAAGCACCAAGTTTGAGAAGGATTATCTACCGGGTACC CATGAGAGGGAGGCGCTGGAAGCCAAGGTGGAGAAGGACTACGTCTCTGTCCTTGTGCAGAATTGTAGGTTTGAGTTGCAGAGGAAGCAGTGGGGTTTTG TAAGGGAGACTCCTCATTGTGAAATGTTGCAGCAGTTTCAAGATGGGGAATTGGCGGCTTGA
AA sequence Show only first row Show all	>Potri.006G153700.1 pacid=42768587 polypeptide=Potri.006G153700.1.p locus=Potri.006G153700 ID=Potri.006G153700.1.v4.1 annot-version=v4.1 MDSNKDDALKCLEIGKEALESGDRSRALKFITKARRLDPTLAVDDLLSAAEKDEPNKTAAANINNGSTTATASNESKVRQRGSSSSSSSYTEEQISIVRE IRKKKNYYEILGLEKSCSVEDVRKAYRKLSLKVHPDKNKSPGAEDAFKAVSKAFQCLSNEESRSKYDVTGTEEPLYERRSSSHHRHGYYNYNDDLDPDEI FRQFFFGGGMRPATTQFRSFNFGAGMGGPRTDHNGSGFNFRALIQLLPVLLIFLFNFLPSSEPIYALSRSYPYEYRFTTQRGVNFYVKSTKFEKDYLPGT HEREALEAKVEKDYVSVLVQNCRFELQRKQWGFVRETPHCEMLQQFQDGELAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57340			Heat shock protein DnaJ, N-ter...		Potri.006G153700 [exp]	0	1
AT3G21865		PEX22	peroxin 22 (.1)		Potri.017G038800 [exp]	3.00	0.8033
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Potri.015G137200 [exp]	3.87	0.7226
AT1G12650			unknown protein		Potri.001G110000 [exp]	8.94	0.7492
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.001G240100 [exp]	11.35	0.7539	MBD905,Pt-MBD5.1
AT3G14080			Small nuclear ribonucleoprotei...		Potri.001G166600 [exp]	12.00	0.7304
AT1G64890			Major facilitator superfamily ...		Potri.019G043000 [exp]	13.56	0.6547
					Potri.017G061800 [exp]	20.00	0.7206
					Potri.001G142300 [exp]	24.39	0.7205
AT3G58520			Ubiquitin carboxyl-terminal hy...		Potri.006G195900 [exp]	24.91	0.7040
AT3G47300		SELT	SELT-like protein precursor (....		Potri.001G253000 [exp]	32.61	0.7378

Compare expression of checked genes

Potri.006G153700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.