Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SYNC3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56680 930 / 0 SYNC1ARATH, SYNC1, EMB2755 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT1G70980 890 / 0 SYNC3, SYNC1 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT4G17300 483 / 8e-166 ATNS1, NS1, OVA8 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT3G07420 469 / 3e-159 ATNS2, SYNC2_ARATH, NS2 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) AT1G68420 109 / 1e-28 Class II aaRS and biotin synthetases superfamily protein (.1) AT4G31180 117 / 1e-27 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) AT5G38750 102 / 1e-25 asparaginyl-tRNA synthetase family (.1) AT4G26870 110 / 2e-25 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G070000 [exp] 1102 / 0 AT5G56680 931 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.017G028800 [exp] 503 / 2e-173 AT4G17300 888 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.002G249700 [exp] 504 / 4e-172 AT3G07420 654 / 0.0 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Potri.007G129800 [exp] 499 / 4e-172 AT4G17300 872 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.006G085400 [exp] 113 / 2e-26 AT4G31180 709 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032704 [exp] 982 / 0 AT5G56680 907 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10012920 [exp] 866 / 0 AT5G56680 799 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10025874 [exp] 489 / 2e-166 AT3G07420 604 / 0.0 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Lus10007470 [exp] 483 / 7e-165 AT4G17300 873 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10028945 [exp] 440 / 6e-150 AT4G17300 740 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10038228 [exp] 330 / 3e-109 AT3G07420 353 / 7e-118 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Lus10008180 [exp] 273 / 4e-89 AT5G56680 268 / 2e-87 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10028555 [exp] 109 / 2e-25 AT4G31180 606 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10018862 [exp] 106 / 4e-24 AT4G31180 667 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10028557 [exp] 69 / 1e-13 AT4G31180 235 / 8e-76 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [poplar] [flax] tRNA_synt_II PF00152 [poplar] [flax] tRNA-synt_2 tRNA synthetases class II (D, K and N) CL0021 [poplar] [flax] OB PF01336 [poplar] [flax] tRNA_anti-codon OB-fold nucleic acid binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G153900.1 pacid=42768085 polypeptide=Potri.006G153900.1.p locus=Potri.006G153900 ID=Potri.006G153900.1.v4.1 annot-version=v4.1 ATGAGTGGCCAGGCCACGCCTCCAGCACCAGAACTCGCAGAGATGGCCATTAGCGACGGCCCTTCTCTTAAGCACCCATTCTCCGACCGGGCCCCGGTCC GATCAATCGTTTGTCGTCCCGATGGAGGAGCTGGGCTGGCAGGCCAACGAGTCCGCGCCGGTGGGTGGGTGAAGACCGGGAGAGAGCAAGGGAAGGGTTC CTTCGCTTTCTTGGAGGTGAACGACGGATCGTGTCCTGCAAACCTTCAGGTTATCGTGGATGCTGGTGTAGCAGATCTGAGCACGCTTGTGCAGACTGGG ACTTGCGTGTTAGTTGAGGGCTTGCTTAAGGCCCCCCCTGAAGGTACAAAGCAGAAGATTGAACTCCGTGTTGATAAGGTGCTCCATGTAGGCCCTACCG ATCCTGCCAGTTATCCGATTCCCAAGACGAAGCTCTCCCTTGAGTTTTTGAGGGATCATATTCACCTTAGGGCCCGAACTAATACGATTTCTGCAGTTGC TCGAATTCGCAATGCACTTGCTTTTGCCACGCACTCTTTCTTTCAAGAGCATGGTTTTCTGTATGTTCATACCCCAATTATCACCACAAGTGACTGTGAA GGTGCTGGTGAAATGTTTCAAGCTACAACCTTGATTAGTGAAGCTGAAAAGCTCGAGAAGGAGCTCATTTTGAATCCTCCGCCTACTGAGGCTGACTTAG AAGCAGCTAAGCTTACCGTTGGGGAGAAAGGTAATATTGTTTCTCAACTCAAAGCTGCTAAGGCAACTAAGGAGGAAATTAGTGCTTCTGTGGCTGATCT TAAAATAGCCAAAGAGAATCTCTCAAGGGTGGAGGAAAGAGCTAAGCTTAAACCTGGTATTCCTAAAAAAGATGGCAAGATTGATTATGGTCAAGATTTC TTTTCCCGTCAGGCATTTTTGACAGTCTCTGGCCAACTTCAAGTTGAAACCTATGCTTGTGCTGTCTCCAGTGTCTATACATTTGGACCAACGTTTAGAG CTGAGCATTCTCACACTTCTAGACATTTGGCTGAGTTCTGGATGGTGGAGCCTGAAATAGCATTTGCAGATCTTCAGGATGACATGAATTGTGCAGAGGC ATATGTGAAATACATGTGCCAATGGCTACTCAACAAGTGCTTTGATGACATGGAACTTATGGCTAAGCTTTATGATAAAGGTTGTATTGATCGTCTAAGA ATGGTTTCTTCAACCCCTTTTGAGCGTATTTCTTACACAGAAGCAGTGCAACTGCTAGAGGAGGCAGTGAGAGGTGGTAAGGAGTTTGAGAAGAACGTGG AATGGGGGATTGATCTGGCATCTGAGCATGAAAGATACTTGACAGAGGATATATTTAAAAAGCCTGTAATTGTGTACAACTATCCTAAGGGAATAAAAGC ATTCTACATGAGGCTCAATGATGATTCAAAGACAGTGGCTGCTATGGATATCCTTGTACCAAAGGTGGGAGAATTGATCGGTGGAAGCCAAAGGGAGGAA CGCTATGAGGTTATTCAGCAGAGAATTGCTGAGATGGGACTGCCTATTGAGCCATATGAGTGGTACCTCGACCTGCGGCGTTACGGGACTGTAAAACATT GTGGTTTTGGCCTGGGTTTTGAGAGGATGATACTTTTTGCCACTGGAATCGACAATATTAGAGATGTCATTCCATTCCCCAGATACCCTGGCAGAGCAGA TCTGTGA
AA sequence Show only first row Show all	>Potri.006G153900.1 pacid=42768085 polypeptide=Potri.006G153900.1.p locus=Potri.006G153900 ID=Potri.006G153900.1.v4.1 annot-version=v4.1 MSGQATPPAPELAEMAISDGPSLKHPFSDRAPVRSIVCRPDGGAGLAGQRVRAGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDAGVADLSTLVQTG TCVLVEGLLKAPPEGTKQKIELRVDKVLHVGPTDPASYPIPKTKLSLEFLRDHIHLRARTNTISAVARIRNALAFATHSFFQEHGFLYVHTPIITTSDCE GAGEMFQATTLISEAEKLEKELILNPPPTEADLEAAKLTVGEKGNIVSQLKAAKATKEEISASVADLKIAKENLSRVEERAKLKPGIPKKDGKIDYGQDF FSRQAFLTVSGQLQVETYACAVSSVYTFGPTFRAEHSHTSRHLAEFWMVEPEIAFADLQDDMNCAEAYVKYMCQWLLNKCFDDMELMAKLYDKGCIDRLR MVSSTPFERISYTEAVQLLEEAVRGGKEFEKNVEWGIDLASEHERYLTEDIFKKPVIVYNYPKGIKAFYMRLNDDSKTVAAMDILVPKVGELIGGSQREE RYEVIQQRIAEMGLPIEPYEWYLDLRRYGTVKHCGFGLGFERMILFATGIDNIRDVIPFPRYPGRADL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Potri.006G153900 [exp]	0	1	Pt-SYNC3.1
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Potri.007G065600 [exp]	1.73	0.8955	Pt-LOS1.2
AT2G33840			Tyrosyl-tRNA synthetase, class...		Potri.010G248900 [exp]	2.00	0.8586
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Potri.003G186900 [exp]	2.44	0.8480
AT3G56150		ATTIF3C1, ATEIF...	eukaryotic translation initiat...		Potri.002G016900 [exp]	3.00	0.8245	Pt-TIF3.10
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Potri.007G065700 [exp]	4.89	0.8446	LOS1.1
AT5G07900			Mitochondrial transcription te...		Potri.001G034966 [exp]	6.16	0.7943
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Potri.006G265300 [exp]	7.93	0.7885
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.004G029900 [exp]	9.79	0.8325
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Potri.002G252900 [exp]	10.09	0.8390	Pt-CPN60.2
AT1G73720		SMU1	SUPPRESSORS OF MEC-8 AND UNC-5...		Potri.011G156900 [exp]	10.19	0.7330

Compare expression of checked genes

Potri.006G153900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.