Plant FIBer expression Database

Potri.006G154000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G29160 223 / 6e-74 SNF7.1 SNF7 family protein (.1.2.3)
AT2G19830 221 / 2e-73 VPS32, SNF7.2 SNF7 family protein (.1)
AT5G09260 48 / 7e-07 VPS20.2 vacuolar protein sorting-associated protein 20.2 (.1)
AT5G63880 46 / 6e-06 VPS20.1 SNF7 family protein (.1.2)
AT3G10640 45 / 1e-05 VPS60.1 SNF7 family protein (.1.2)
AT5G04850 44 / 2e-05 VPS60.2 SNF7 family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G069900
[exp]
234 / 1e-78 AT4G29160 222 / 1e-73 SNF7 family protein (.1.2.3)
Potri.007G101500
[exp]
49 / 5e-07 AT5G09260 255 / 1e-86 vacuolar protein sorting-associated protein 20.2 (.1)
Potri.005G067700
[exp]
49 / 5e-07 AT5G09260 248 / 7e-84 vacuolar protein sorting-associated protein 20.2 (.1)
Potri.008G018300
[exp]
48 / 1e-06 AT3G10640 404 / 5e-145 SNF7 family protein (.1.2)
Potri.010G242700
[exp]
45 / 1e-05 AT3G10640 405 / 1e-145 SNF7 family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012921
[exp]
226 / 5e-75 AT2G19830 318 / 1e-111 SNF7 family protein (.1)
Lus10032705
[exp]
224 / 4e-74 AT2G19830 321 / 1e-112 SNF7 family protein (.1)
Lus10043454
[exp]
48 / 2e-06 AT5G04850 383 / 6e-136 SNF7 family protein (.1.2)
Lus10034131
[exp]
47 / 2e-06 AT5G04850 374 / 3e-133 SNF7 family protein (.1.2)
Lus10028867
[exp]
47 / 4e-06 AT5G04850 399 / 7e-139 SNF7 family protein (.1.2)
Lus10008953
[exp]
46 / 6e-06 AT5G04850 404 / 9e-145 SNF7 family protein (.1.2)
Lus10037699
[exp]
45 / 2e-05 AT5G09260 340 / 3e-120 vacuolar protein sorting-associated protein 20.2 (.1)
Lus10015693
[exp]
44 / 3e-05 AT5G09260 333 / 2e-117 vacuolar protein sorting-associated protein 20.2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0235 PspA PF03357 Snf7 Snf7
Representative CDS sequence
>Potri.006G154000.8 pacid=42767086 polypeptide=Potri.006G154000.8.p locus=Potri.006G154000 ID=Potri.006G154000.8.v4.1 annot-version=v4.1
ATGTTTAACCGCTTATTTGGAAAACCTAAGCAGGAAACCAATGCTCTAACTACGTTAGACAAATTAAACGAGACACTTGAAATGCTAGAGAAAAAGGAGA
AGGTGCTCCTTAAAAAGGCAGCTGCCGAAGTTGAAAAGGCTAAGGAATTCACCCGAGGGAAAAACAAAAGGGCTGCAATTCAATGTTTGAAGAGGAAGAG
GCTGTATGAGCAGCAAATAGAACAACTTGGAAACTTTCAATTGCGCATTCATGATCAGATGATAATGTTAGAAGGTGCAAAAGCTACTACTGAAACTGTA
GATGCGTTAAGAACTGGTGCAGCTGCTATGAAGGCAATGCAGAAAGCAACGAATATTGATGACGTGGACAAGACGATGGATGAGATCAATGAGCAGACAG
AGAACATGAAACAGATTCAAGAAGCATTATCAACCCCCATTGGTGCTGCAGCTGATTTCGATGAGGATGAATTGGAGGCAGAACTTGAAGAACTGGAAGG
AGCTGAATTGGAAGAGCAGCTTCTTCAGCCAGCAACAACAGCTCCTGCTGCTCCAGTGCAGGTCCCAGCTGGCAAGAAACCAGTTCCTCAAAAACGCACA
GCTGAGGAAGAAGAACTTGCTAACTTACAGGCTGAGATGGCCCTTTGA
AA sequence
>Potri.006G154000.8 pacid=42767086 polypeptide=Potri.006G154000.8.p locus=Potri.006G154000 ID=Potri.006G154000.8.v4.1 annot-version=v4.1
MFNRLFGKPKQETNALTTLDKLNETLEMLEKKEKVLLKKAAAEVEKAKEFTRGKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETV
DALRTGAAAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELEAELEELEGAELEEQLLQPATTAPAAPVQVPAGKKPVPQKRT
AEEEELANLQAEMAL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G29160 SNF7.1 SNF7 family protein (.1.2.3) Potri.006G154000
[exp]
0 1
AT3G19000 2-oxoglutarate (2OG) and Fe(II... Potri.009G107550
[exp]
2.82 0.6568
AT4G10810 unknown protein Potri.003G143800
[exp]
6.63 0.6548
AT5G59140 BTB/POZ domain-containing prot... Potri.009G037800
[exp]
15.68 0.6173
AT4G25390 Protein kinase superfamily pro... Potri.012G131900
[exp]
15.90 0.5913
AT3G62140 unknown protein Potri.014G112900
[exp]
19.59 0.6364
AT3G19000 2-oxoglutarate (2OG) and Fe(II... Potri.009G107600
[exp]
21.07 0.6486 2OGox7
AT3G24100 Uncharacterised protein family... Potri.017G055501
[exp]
25.88 0.5970
AT1G23260 MMZ1 ,UEV1A UBIQUITIN E2 VARIANT 1A, MMS Z... Potri.010G107700
[exp]
25.98 0.6001
AT2G17030 F-box family protein with a do... Potri.004G179685
[exp]
26.19 0.6099
Potri.017G061800
[exp]
28.89 0.6247

Potri.006G154000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.