Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20070 590 / 0 ATNUDX19, ATNUDT19 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19, nudix hydrolase homolog 19 (.1) AT2G42070 44 / 9e-05 ATNUDX23, ATNUDT23 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23, nudix hydrolase homolog 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G070400 [exp] 726 / 0 AT5G20070 609 / 0.0 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19, nudix hydrolase homolog 19 (.1) Potri.006G192800 [exp] 48 / 5e-06 AT2G42070 351 / 3e-122 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23, nudix hydrolase homolog 23 (.1) Potri.016G045300 [exp] 48 / 7e-06 AT2G42070 353 / 3e-123 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23, nudix hydrolase homolog 23 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030056 [exp] 576 / 0 AT5G20070 594 / 0.0 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19, nudix hydrolase homolog 19 (.1) Lus10014493 [exp] 562 / 0 AT5G20070 590 / 0.0 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19, nudix hydrolase homolog 19 (.1) Lus10029289 [exp] 49 / 4e-06 AT2G42070 355 / 5e-124 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23, nudix hydrolase homolog 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [poplar] [flax] NUDIX PF00293 [poplar] [flax] NUDIX NUDIX domain CL0261 [poplar] [flax] NUDIX PF09296 [poplar] [flax] NUDIX-like NADH pyrophosphatase-like rudimentary NUDIX domain CL0167 [poplar] [flax] Zn_Beta_Ribbon PF09297 [poplar] [flax] zf-NADH-PPase NADH pyrophosphatase zinc ribbon domain
Representative CDS sequence Show only first row Show all	>Potri.006G154200.1 pacid=42770482 polypeptide=Potri.006G154200.1.p locus=Potri.006G154200 ID=Potri.006G154200.1.v4.1 annot-version=v4.1 ATGCCCATAAGCCTCCAATCCCACGCCTTTGCAGGCAATCCTCTTAGGTCTAAAACACCCCAACCAACCCACCCATTATCACCTGCCTTAGCCCTTGAAA CCCTCAAAACTCAACTTGTAGACAATTCCCACCAATCCTCTTCTCTTAATTTCAAGGTTCTACCCTTTAGGAAGGGTAGGCCTTTGGCGTCCTCCACTAG CACCGATGCTGATTTGGGGCCCACGTGGCATCTGGGCTGGATCAGTTTGGCTGATTGTAAAGGTTTATTTTCTGCTTCTGGGGTTGAATTCACCGGAGAC AGCTTGTTTTATCTGGGTTCAAGCTCTGAACAAGATGTGGATGTGGTTTATTGGGCAATTGATGTCTCCGGTGAAAATAGTTTATTCACTGAATTTGATA GTGAGCAGGTTTGCTTCATTGAGTTAAGAACACTTATGGTGGCTACAGATTGGGCTGATAAGCAGGCCATGGTTGATTTGGCCGTTGCTGGCCATGCCAA AGCATTGCTGGAGTGGCATAACATCTCACGTTTTTGTGGATATTGCGGAGAGAAAACTGTTCCCATGGAATCTGGGAGGCGGAAACAATGCTCAAATGAG TTGTGCAGAAGGAAAGTTTATCCTCGTGTGGATCCAGTTGTCATCATGTTAGTTATTGATCGAGAAAATGATCGTGCCCTTTTAGGCAGACAGTCAAGAT TTGTACCCCGAATGTGGAGTTGCTTAGCTGGTTTCATAGAGCCTGGAGAAAGCTTAGAAGAGGCAGTGAGGAGAGAAACATGGGAAGAGACTGCCATTGA AGTAGGAGAAGTTATGTATCATAGCTCTCAGCCATGGCCTGTTGGCCCAAGCAGCATGCCATGCCAGCTGATGGTGGGTTTCTTTGCATATGCAAAATCA CTTGAAATAAAAGTAGACAAGGCAGAGTTGGAAGATGCTCAATGGCACAGTAGAGAAGATGTCCGAAAAGCTTTAATGTTTGCGGAATACGAGAAGGCAC AAAGAACAGCAGCGGCCAAGGTAGACCAGATGTGTAGAGGGGTTGAGAAAGGACAGAGTTTATCATCAGATTTTAATGTAGAAAGTGGGGAACTTGCTCC GATGTTTTTCCCTGGACCTTTCGCAATTGCGCATCGCCTAATAACTTCCTGGGTAAATCAAGGTTCAACATTTGATGCTCTGCAATTGAAACAACAACCA AATAGTTATCAGTCAAATTTGTAG
AA sequence Show only first row Show all	>Potri.006G154200.1 pacid=42770482 polypeptide=Potri.006G154200.1.p locus=Potri.006G154200 ID=Potri.006G154200.1.v4.1 annot-version=v4.1 MPISLQSHAFAGNPLRSKTPQPTHPLSPALALETLKTQLVDNSHQSSSLNFKVLPFRKGRPLASSTSTDADLGPTWHLGWISLADCKGLFSASGVEFTGD SLFYLGSSSEQDVDVVYWAIDVSGENSLFTEFDSEQVCFIELRTLMVATDWADKQAMVDLAVAGHAKALLEWHNISRFCGYCGEKTVPMESGRRKQCSNE LCRRKVYPRVDPVVIMLVIDRENDRALLGRQSRFVPRMWSCLAGFIEPGESLEEAVRRETWEETAIEVGEVMYHSSQPWPVGPSSMPCQLMVGFFAYAKS LEIKVDKAELEDAQWHSREDVRKALMFAEYEKAQRTAAAKVDQMCRGVEKGQSLSSDFNVESGELAPMFFPGPFAIAHRLITSWVNQGSTFDALQLKQQP NSYQSNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.006G154200 [exp]	0	1
AT5G66360		DIM1B	adenosine dimethyl transferase...		Potri.018G018900 [exp]	1.73	0.8963
					Potri.007G125700 [exp]	2.23	0.8637
AT4G35910			Adenine nucleotide alpha hydro...		Potri.006G051300 [exp]	2.44	0.8695
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Potri.002G089900 [exp]	3.16	0.8770
AT1G25370			Protein of unknown function (D...		Potri.008G122600 [exp]	4.00	0.8409
AT1G08710			F-box family protein (.1.2)		Potri.013G067600 [exp]	4.58	0.8439
AT5G16800			Acyl-CoA N-acyltransferases (N...		Potri.013G079900 [exp]	5.09	0.8257
AT5G10900			Calcineurin-like metallo-phosp...		Potri.001G196600 [exp]	5.29	0.8245
AT1G17640			RNA-binding (RRM/RBD/RNP motif...		Potri.003G040900 [exp]	6.00	0.8530
AT3G22430			unknown protein		Potri.010G087400 [exp]	6.32	0.8680

Compare expression of checked genes

Potri.006G154200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.