Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25910 152 / 6e-43 Protein of unknown function (DUF1644) (.1) AT1G68140 150 / 7e-43 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) AT3G24740 150 / 2e-42 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT4G08460 128 / 7e-35 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) AT1G77770 127 / 1e-34 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT4G31410 127 / 5e-34 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT1G80220 120 / 5e-32 Protein of unknown function (DUF1644) (.1) AT1G15430 89 / 4e-20 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT2G26050 84 / 1e-18 Protein of unknown function (DUF1644) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G070500 [exp] 413 / 4e-145 AT3G25910 246 / 2e-79 Protein of unknown function (DUF1644) (.1) Potri.003G060800 [exp] 180 / 9e-53 AT3G25910 188 / 3e-55 Protein of unknown function (DUF1644) (.1) Potri.001G208800 [exp] 163 / 9e-48 AT1G68140 312 / 6e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.003G021800 [exp] 161 / 2e-46 AT1G68140 315 / 2e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.002G088700 [exp] 156 / 7e-45 AT4G08460 245 / 2e-80 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.005G172300 [exp] 151 / 4e-43 AT4G08460 219 / 2e-70 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.002G216600 [exp] 152 / 6e-43 AT3G24740 334 / 2e-113 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Potri.006G275400 [exp] 134 / 1e-36 AT4G31410 311 / 4e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Potri.018G006400 [exp] 133 / 4e-36 AT4G31410 331 / 2e-113 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019436 [exp] 280 / 7e-93 AT3G25910 277 / 3e-91 Protein of unknown function (DUF1644) (.1) Lus10043292 [exp] 278 / 4e-92 AT3G25910 282 / 2e-93 Protein of unknown function (DUF1644) (.1) Lus10022809 [exp] 159 / 5e-46 AT3G24740 351 / 1e-120 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Lus10020957 [exp] 158 / 7e-46 AT1G68140 309 / 1e-104 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10004940 [exp] 159 / 9e-46 AT1G68140 319 / 4e-108 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10025356 [exp] 155 / 2e-45 AT1G68140 282 / 3e-95 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10026800 [exp] 153 / 3e-44 AT3G25910 149 / 1e-42 Protein of unknown function (DUF1644) (.1) Lus10011876 [exp] 157 / 4e-44 AT3G24740 358 / 5e-122 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Lus10009772 [exp] 142 / 4e-40 AT4G08460 256 / 3e-85 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10024758 [exp] 139 / 8e-39 AT4G08460 251 / 8e-83 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF07800 [poplar] [flax] DUF1644 Protein of unknown function (DUF1644)
Representative CDS sequence Show only first row Show all	>Potri.006G154300.2 pacid=42768345 polypeptide=Potri.006G154300.2.p locus=Potri.006G154300 ID=Potri.006G154300.2.v4.1 annot-version=v4.1 ATGCCAAAGGATAGAAGAGATCGTTCCATATCTTTTGATAGGTGCAGGGCATCTCCTTATACATGCAACTCCAGCTGTTCAAGACGTTCATCACCTAAAC TCCCTTCAGAAACTGAGGAGAATCTGAAGGAATGGGAAGAAGCCAGGTGCTCTGTATGCATGGAACATCCACACAATGCTGTTCTCCTTATTTGTTCCTC ACATGAGAAGGGTTGCCGTCCATACATGTGTGATACAAGCTATCGTCATTCTAATTGTCTTGATCAGTTTTGCAAGTCATTTGCAGAAACAACTTCATCA ACTCCACAATCACAAGAGAGTAGTCTCGCAACCATGAATTCTTCTGAAGTTGTCAGCTCAGCATCAACAGTTACAGTTCCACCGGAAGATCGATTTGAGG AAGGATCCTTACCCACCGAAACCATTTCTTGTGAGAACAAGGCGCATCCAAAGCTAGTGTGCCCCCTCTGTCGGGGGCAGATAAAAGACTGGCTTGTCAT GGAACCCGCACGAAGTTTCATGAATGCGAAATCAAGGAGCTGTGCCTGCGAGACTTGCAATTTTACTGGCACGTATTCAGATCTAAGGAAACATGCTAGG CTTGAACACCCACTTGTTCGTCCATCAGAGGCTGATCCAGAGCGGCAACGTGATTGGAGGAGGCTGGAGCGTCAGAGGGACTTTGGAGACATGCTCAGCA CACTCCAATCTTCATTTGGAGAAGAGAGGGGTGACAACATTTTGCCTATAGATGATGGTGGTTGGCTCACTGTATTCTTTCTTATAAGAGTTTTTAGACC TGGATCTAGTTCAAGGAGTAGTAGCTGGTCTGGTGCCTCAAGAGTAGCACAGCTAGGTTTCAGAAGGCGAGCCATCCGGCATTGGGGGGAGAATCATGAA GGTGAAACTGGATCTTCTTCCAGAGAAGATGACAATGATTCTTCAGACGGTGGGTCAGGCCCTCGGAGGCGCAGGGAGCGCAACCGCCAAAGAACAACGC CAGACCAGTTGTGA
AA sequence Show only first row Show all	>Potri.006G154300.2 pacid=42768345 polypeptide=Potri.006G154300.2.p locus=Potri.006G154300 ID=Potri.006G154300.2.v4.1 annot-version=v4.1 MPKDRRDRSISFDRCRASPYTCNSSCSRRSSPKLPSETEENLKEWEEARCSVCMEHPHNAVLLICSSHEKGCRPYMCDTSYRHSNCLDQFCKSFAETTSS TPQSQESSLATMNSSEVVSSASTVTVPPEDRFEEGSLPTETISCENKAHPKLVCPLCRGQIKDWLVMEPARSFMNAKSRSCACETCNFTGTYSDLRKHAR LEHPLVRPSEADPERQRDWRRLERQRDFGDMLSTLQSSFGEERGDNILPIDDGGWLTVFFLIRVFRPGSSSRSSSWSGASRVAQLGFRRRAIRHWGENHE GETGSSSREDDNDSSDGGSGPRRRRERNRQRTTPDQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25910			Protein of unknown function (D...		Potri.006G154300 [exp]	0	1
AT1G59520		CW7	CW7 (.1.2.3)		Potri.014G013500 [exp]	3.74	0.7674	CW7.2
AT2G40780			Nucleic acid-binding, OB-fold-...		Potri.019G061200 [exp]	4.47	0.8356
AT4G13030			P-loop containing nucleoside t...		Potri.002G247400 [exp]	5.29	0.8296
AT3G06270			Protein phosphatase 2C family ...		Potri.010G028300 [exp]	8.94	0.8057
AT3G62940			Cysteine proteinases superfami...		Potri.014G134100 [exp]	8.94	0.7524
AT5G54470	CO		B-box type zinc finger family ...		Potri.001G414700 [exp]	10.48	0.7999
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Potri.018G083000 [exp]	11.48	0.8062
AT5G63630			P-loop containing nucleoside t...		Potri.002G169800 [exp]	14.38	0.7867
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Potri.018G067200 [exp]	14.49	0.7846	PRMT901
AT1G04530		TPR4	tetratricopeptide repeat 4, Te...		Potri.010G065400 [exp]	17.88	0.7870

Compare expression of checked genes

Potri.006G154300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.