Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26710 789 / 0 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT1G75130 406 / 3e-137 CYP721A1 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) AT2G46950 407 / 2e-136 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) AT3G14620 404 / 4e-136 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT3G14610 391 / 3e-131 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT2G46960 390 / 6e-131 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) AT3G14660 385 / 4e-129 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT3G14690 381 / 2e-127 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT3G14640 380 / 8e-127 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14680 378 / 3e-126 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G070900 [exp] 899 / 0 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.002G134500 [exp] 436 / 5e-148 AT1G75130 540 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.011G098800 [exp] 424 / 5e-144 AT3G14690 640 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G099400 [exp] 422 / 3e-143 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101500 [exp] 422 / 4e-143 AT3G14690 609 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101401 [exp] 421 / 8e-143 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G099800 [exp] 420 / 2e-142 AT3G14690 612 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.002G263800 [exp] 415 / 2e-140 AT1G75130 493 / 2e-171 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.005G035200 [exp] 413 / 8e-140 AT1G75130 547 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033044 [exp] 793 / 0 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10017771 [exp] 681 / 0 AT2G26710 705 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10016310 [exp] 419 / 4e-142 AT1G75130 596 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10042487 [exp] 412 / 3e-139 AT3G14690 604 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10036822 [exp] 410 / 5e-137 AT2G26710 410 / 4e-137 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036820 [exp] 401 / 6e-135 AT2G26710 397 / 2e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10026178 [exp] 399 / 7e-134 AT3G14690 607 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10042486 [exp] 395 / 2e-132 AT3G14690 580 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10025756 [exp] 394 / 3e-132 AT2G46950 578 / 0.0 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) Lus10010821 [exp] 380 / 7e-127 AT1G75130 522 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.006G154500.1 pacid=42770688 polypeptide=Potri.006G154500.1.p locus=Potri.006G154500 ID=Potri.006G154500.1.v4.1 annot-version=v4.1 ATGGTGGAGCTGTTGTTGTCTTACCACTGGCTTATTAAGCTGCTTGCTATCTCTTTCTTGGCATTAGTTTTGTTGTTAAAGATTGCAGTGTTACTTTGGT GGAGACCTCGAAGAATTGAACACCATTTTGCCAAGCAAGGAATCAGAGGACCCCCTTATCGTTTCTTCATTGGTAATGTGAAGGAGCTTGTGGAAATGAT GTTAAAGGCCTCTTCTCAACCCATGCCTTTCTCTCACAACATACTTCCTAGAGTTCTCTCTTTTTACCATCACTGGAAGAAAATCTACGGTGCAACGTTT CTAGTGTGGTTCGGACCGACGGTTCGACTCACCGTGTCCGACCCAGACCTCATTCGAGAAATCTTTACTTCCAAGTCTGAATTTTATGAGAAGATTGAGG CTCACCCTCTTGTTAAACAGCTCGAAGGTGATGGACTGCTTAGCCTCAAAGGAGAAAAATGGGCTCACCATAGGAAAATTATAGCACCCACATTCCACAT GGAGAATCTCAAATTGCTAGTTCCGGTGGTGGCAAAGAGCGTAACGGATATGCTGGAGCAATGGTTGACAGTGTCAAATTCCGACGAGGTAGAAATTGAA GTTTCTGAATGGTTCCAAACCCTAACAGAAGAAGTCATTACGAGAACAGCATTTGGTAGTAGCTACGAAGATGGAAAGGCCATTTTTCGATTGCAAGCAC AGCAAATGGTCCTTGCTGCCGTAGCATTCCAAAGAGTTCTGATCCCTGGCTACAGGTTCTTTCCAACAAAAAGAAACGTGAATTCGTGGAAACTGGACAA AGAAATCAGGAGATCGTTGATGAAGCTTGTAGAAAGGAGAAGAGAGGGCTCGAGCATTATCAACGAAACACATCGTCATGGTCCTAAGGATTTGTTAGGA CTAATGATTCAAGCCTCAAATTCATCTAAAGATGTAACCGTACATGACATTGTTGAAGAGTGCAAGAGCTTTTTCTTTGCGGGCAAACAGACCACATCCA ACTTGCTGACGTGGACAACAATCCTACTCGCAATGCACCCACATTGGCAGGTTCAAGCACGTGAGGAGGTCTTGAGGGTGTGTGGATCACGTGACATACC CACCAAAGATGATGTTGTCAAGCTTAAGACGCTGACCATGATTCTAAATGAATCCTTACGGTTGTACCCACCGACGATCGCAACAATTAGACGGTCGAAA GCTGATGTAGAGCTGGGGGGCTACAAAATCCCCCGTGGGACCGAGCTCCTGATACCGATATTGGCCCTTCATCATGATCAATCCATATGGGGCCACGATG CAAATGAATTCAACCCTCGTCGCTTCTCGAATGGCGTGGCCCGAGCAGCAAAGCACCATGTGGCGTTCATTCCATTCGGGCTAGGAGTCCGAACCTGCAT TGGCCAAAATCTAGCCATCTTGCAAGCCAAATTAACACTCGCCATAATACTGCAACGATTCTCTTTCAGATTGGCCACTAGCTATCAACATGCACCAACG GTCCTGATGCTACTTTACCCCCAACATGGTGCGCCCATCATCTTTCAACGCCTGCCCAATCCATGA
AA sequence Show only first row Show all	>Potri.006G154500.1 pacid=42770688 polypeptide=Potri.006G154500.1.p locus=Potri.006G154500 ID=Potri.006G154500.1.v4.1 annot-version=v4.1 MVELLLSYHWLIKLLAISFLALVLLLKIAVLLWWRPRRIEHHFAKQGIRGPPYRFFIGNVKELVEMMLKASSQPMPFSHNILPRVLSFYHHWKKIYGATF LVWFGPTVRLTVSDPDLIREIFTSKSEFYEKIEAHPLVKQLEGDGLLSLKGEKWAHHRKIIAPTFHMENLKLLVPVVAKSVTDMLEQWLTVSNSDEVEIE VSEWFQTLTEEVITRTAFGSSYEDGKAIFRLQAQQMVLAAVAFQRVLIPGYRFFPTKRNVNSWKLDKEIRRSLMKLVERRREGSSIINETHRHGPKDLLG LMIQASNSSKDVTVHDIVEECKSFFFAGKQTTSNLLTWTTILLAMHPHWQVQAREEVLRVCGSRDIPTKDDVVKLKTLTMILNESLRLYPPTIATIRRSK ADVELGGYKIPRGTELLIPILALHHDQSIWGHDANEFNPRRFSNGVARAAKHHVAFIPFGLGVRTCIGQNLAILQAKLTLAIILQRFSFRLATSYQHAPT VLMLLYPQHGAPIIFQRLPNP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.006G154500 [exp]	0	1
AT3G63300		FKD1	FORKED 1 (.1.2)		Potri.005G213800 [exp]	8.48	0.8553
AT1G22430			GroES-like zinc-binding dehydr...		Potri.019G041600 [exp]	8.66	0.9001	HNL.5
AT5G57340			unknown protein		Potri.018G090000 [exp]	9.38	0.8596
AT5G26731			unknown protein		Potri.005G000700 [exp]	16.37	0.8742
					Potri.001G041550 [exp]	18.97	0.7885
AT1G51405			myosin-related (.1)		Potri.001G256700 [exp]	21.81	0.8322
AT1G75520		SRS5	SHI-related sequence 5 (.1)		Potri.005G234200 [exp]	24.24	0.8404
AT5G45800		MEE62	maternal effect embryo arrest ...		Potri.011G067900 [exp]	24.97	0.8710
AT2G30230			unknown protein		Potri.006G076500 [exp]	25.13	0.8515
AT5G52450			MATE efflux family protein (.1...		Potri.010G116700 [exp]	26.73	0.8480

Compare expression of checked genes

Potri.006G154500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.