Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	AKT1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26650 816 / 0 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT2G25600 722 / 0 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT4G32500 702 / 0 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT4G22200 328 / 2e-102 AKT3, AKT2/3 potassium transport 2/3 (.1) AT5G46240 308 / 3e-96 KAT1 potassium channel in Arabidopsis thaliana 1 (.1) AT4G18290 289 / 2e-88 KAT2 potassium channel in Arabidopsis thaliana 2 (.1) AT4G32650 235 / 3e-69 AtLKT1, KAT3, ATKC1 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) AT3G02850 218 / 3e-61 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT5G37500 216 / 1e-60 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT2G03430 63 / 6e-11 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G071400 [exp] 975 / 0 AT2G26650 1192 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.018G031600 [exp] 779 / 0 AT2G25600 1078 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.006G249900 [exp] 759 / 0 AT2G25600 1065 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.003G018800 [exp] 358 / 2e-113 AT4G22200 1045 / 0.0 potassium transport 2/3 (.1) Potri.004G132200 [exp] 324 / 3e-101 AT5G46240 913 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Potri.006G245000 [exp] 271 / 2e-82 AT4G32650 752 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.012G124944 [exp] 268 / 3e-81 AT4G32650 734 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.018G035500 [exp] 263 / 2e-79 AT4G32650 777 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.012G043000 [exp] 221 / 2e-62 AT3G02850 1032 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019442 [exp] 875 / 0 AT2G26650 1252 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10043298 [exp] 873 / 0 AT2G26650 1250 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10033052 [exp] 843 / 0 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10013115 [exp] 679 / 0 AT2G25600 1036 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10002529 [exp] 676 / 0 AT2G25600 1030 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10008082 [exp] 632 / 0 AT2G25600 994 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10017765 [exp] 434 / 1e-148 AT2G26650 395 / 1e-130 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10019944 [exp] 335 / 9e-105 AT4G22200 1111 / 0.0 potassium transport 2/3 (.1) Lus10017766 [exp] 319 / 8e-103 AT2G26650 719 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10015474 [exp] 327 / 2e-101 AT4G22200 1093 / 0.0 potassium transport 2/3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00027 [poplar] [flax] cNMP_binding Cyclic nucleotide-binding domain CL0029 [poplar] [flax] PF11834 [poplar] [flax] KHA KHA, dimerisation domain of potassium ion channel CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.006G154600.2 pacid=42767348 polypeptide=Potri.006G154600.2.p locus=Potri.006G154600 ID=Potri.006G154600.2.v4.1 annot-version=v4.1 ATGATGTTTGACATCTTCTACATGCTCTTCAACCTTGGATTGACGGCATACTTAATAGGAAACATGACGAACTTGGTTGTGCACGGGACTAGTCGAACTA GAAGATTTAGAGATACAATTCAAGCTGCTTCAAGTTTCGCTCAGAGGAACCAGCTGCCTGTTCGCCTACAAGATCAGATGCTTGCACATTTGTGCTTGAA GTTCAGGACAGATTCAGAGGGGCTGCAGCAGCAAGAGACTCTTGATTCCCTTCCAAAAGCCATCCGTTCAAGCATTTCACATTATCTTTTCTACTCTCTT GTGGACAAGGTCTACTTGTTTCGAGGGGTTTCCAATGACTTGCTTTTCCAGTTGGTCTCAGAGATGAAAGCCGAGTATTTTCCTCCCAACGAAGACGTGA TCCTGCAGAATGAAGCACCAACAGACTTTTATATACTTGTTACTGGTGCTGTGGATCTACTTGTTATGAAAAATGGAGTTGAACAGGTTGTTGGCGAGGC TAAAACTGGTGATCTTTGCGGTGAAATTGGAGTACTGTGTTGTAGGCCACAGCTCTTCACAGTGCGAACCAAGAGATTGAGCCAACTACTACGACTGAAC CGTACTGCGTTCTTGAATATTGTTCAGGCCAATGTTGGAGACGGGACCATAATCGTGAACAATCTCCTTCAGTATTTGAAAGAACTGAAAGACCCAATTA TGGAAGGAGTATTGCTGGAGACGGAGAACATGCTAGCTCGTGGTAGAATGGACCTACCTCTCACTCTATGCTTTGCAGCACTAAGAGGAGACGACCTTTT GTTGCATCAGTTGTTGAAACGGGGCCTGGATCCAAATGAATCAGACAACAATGGGAGGTCAGCAATGCATATAGCAGCCTCCAAGGGAAGTGAGAACTGT GTCCTACTTCTACTGGATCATGGAGCTGATCCTAACTGCCGAGACTCGGATGGAAATGTACCACTATTGGAGGCAATGCTGGGAGGCCATGAAGCAGTGG CCAAACTACTGATACAAAATGGTGCAAGCATACATCATGGAGATGTGGGCCATTTTGCATGCACTGCTGCTGAGAAAAACAACTTGAACTTGCTCAATGA AATTGTTCGATATGGAGGGGATGTGACAAGTCCAAGGAACAATGGCATCACTGCTCTGCATGTAGCAGTGTGTGAGGACAACGCTGAAATAGTGAGATTC CTCTTGGATCAAGGTGCTGATATTGACAAACCAGATGATGTCCATGGTTGGACTCCAAGGGGTCTAGCTGAGCAACAAGGACATGAAGAAATAAGATTCA TTTTCCAAACTCGTAAAGAGGCTAAAACGCAATCCTTTGTTGCTATTCCTGAGAAGCAGGATTATGGAATTCGATTTCTTGGGAGGTTTACAAGTGAACC AACTATTCGACCTCTGTCTCAAGAAGGTTCATTCCCAGCTACAGATGCATCATGGAGTCAAACCCGTCCGAGGCGCAGGACTAACAATTTTCACAACTCA ATCTTCGGGATGATGTCAGCTGCCCACAGAGGGAAGAAAGACTTGCTGTTCCCAATCAGCCATACTAGTGGTCATGGAGCTAGTCCTGCTAGAGTAACAA TTAGTTGCCCAGAAAAGGAAGAAGTTGCAGGAAAGCTTGTTCTACTTCCAAATAGCTTTCAGGCATTGCTTGAGATTGGTGCTAAAAAATTCGACATCTC ACCCGCCAAAGTAATGAGCAAGGATAGAGCTGAAATTGATGACATTGAGGTGATTAGAGATGGTGATCATCTTATATTTGCCACTGATGGAATGCAAGAG ACTAACTACAAAGACTCATAA
AA sequence Show only first row Show all	>Potri.006G154600.2 pacid=42767348 polypeptide=Potri.006G154600.2.p locus=Potri.006G154600 ID=Potri.006G154600.2.v4.1 annot-version=v4.1 MMFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRRFRDTIQAASSFAQRNQLPVRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSL VDKVYLFRGVSNDLLFQLVSEMKAEYFPPNEDVILQNEAPTDFYILVTGAVDLLVMKNGVEQVVGEAKTGDLCGEIGVLCCRPQLFTVRTKRLSQLLRLN RTAFLNIVQANVGDGTIIVNNLLQYLKELKDPIMEGVLLETENMLARGRMDLPLTLCFAALRGDDLLLHQLLKRGLDPNESDNNGRSAMHIAASKGSENC VLLLLDHGADPNCRDSDGNVPLLEAMLGGHEAVAKLLIQNGASIHHGDVGHFACTAAEKNNLNLLNEIVRYGGDVTSPRNNGITALHVAVCEDNAEIVRF LLDQGADIDKPDDVHGWTPRGLAEQQGHEEIRFIFQTRKEAKTQSFVAIPEKQDYGIRFLGRFTSEPTIRPLSQEGSFPATDASWSQTRPRRRTNNFHNS IFGMMSAAHRGKKDLLFPISHTSGHGASPARVTISCPEKEEVAGKLVLLPNSFQALLEIGAKKFDISPAKVMSKDRAEIDDIEVIRDGDHLIFATDGMQE TNYKDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Potri.006G154600 [exp]	0	1	AKT1.1
AT2G32580			Protein of unknown function (D...		Potri.004G006500 [exp]	4.24	0.9133
AT3G24060			Plant self-incompatibility pro...		Potri.003G175200 [exp]	4.89	0.8970
AT3G19090			RNA-binding protein (.1)		Potri.009G106500 [exp]	5.29	0.8968
AT2G37980			O-fucosyltransferase family pr...		Potri.006G095300 [exp]	5.83	0.9065
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.001G298900 [exp]	6.70	0.8769
AT1G60460			unknown protein		Potri.010G041900 [exp]	9.79	0.8920
AT3G11470			4'-phosphopantetheinyl transfe...		Potri.016G078400 [exp]	13.41	0.8809
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Potri.004G000750 [exp]	21.81	0.8882
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Potri.010G197700 [exp]	22.24	0.8828
					Potri.004G071450 [exp]	24.24	0.8776

Compare expression of checked genes

Potri.006G154600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.