Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55740 706 / 0 CRR21 chlororespiratory reduction 21, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G19720 314 / 3e-96 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G12770 251 / 5e-74 MEF22 mitochondrial editing factor 22 (.1) AT4G39530 253 / 9e-74 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18485 251 / 1e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21300 250 / 1e-72 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53360 243 / 1e-70 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G33680 240 / 6e-70 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G69350 238 / 1e-68 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18520 234 / 1e-68 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G215500 [exp] 299 / 4e-90 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 297 / 3e-89 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G030200 [exp] 291 / 1e-87 AT1G19720 985 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.018G067500 [exp] 281 / 5e-83 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G244500 [exp] 259 / 5e-77 AT3G15130 891 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 263 / 1e-76 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G018800 [exp] 259 / 3e-76 AT2G13600 463 / 3e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G152000 [exp] 256 / 2e-75 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.011G156800 [exp] 255 / 1e-74 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007840 [exp] 604 / 0 AT5G55740 579 / 0.0 chlororespiratory reduction 21, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004751 [exp] 603 / 0 AT5G55740 577 / 0.0 chlororespiratory reduction 21, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 288 / 8e-86 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 274 / 1e-80 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001230 [exp] 270 / 1e-79 AT1G19720 890 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10013991 [exp] 265 / 3e-77 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010320 [exp] 253 / 2e-75 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015414 [exp] 256 / 4e-74 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10037362 [exp] 249 / 1e-73 AT3G57430 477 / 9e-158 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022368 [exp] 255 / 2e-73 AT2G13600 414 / 2e-129 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.006G155400.1 pacid=42768627 polypeptide=Potri.006G155400.1.p locus=Potri.006G155400 ID=Potri.006G155400.1.v4.1 annot-version=v4.1 ATGGCTTCTCTTGCTTTCACTCCAACTCCAACCCCAAAACTTGATCTCTTTCACTCTAAAGCTAAACCCACAAAATCCTTCAAAAAAGTAATTAGAAAAC CACCCCATCTTTCTATGCCTCAAATCCAAAATAAAAACTGCCAATCTAATTTGCAACAATCTTACTTCAACACCATCTTTTCTCTATGTGGACAAGGTCA AATTCAAGCAGCTTTCAAAATTTTAACTGAGATGGACAGAAGAAAAATCCCAATTGGACCCGATATCTATGGTCTGCTACTTCAGGGATGCCTCTATGAT CGTGCTCTCTTTATGGGTCAGCAAATTCACTCTCGAATTATAAAAATTGGTGATTCTCTTGCAACAAATGAGTATTTAGAGACGAAGTTGTTCATTTTTT ATGCAAAATGCCATCTTTTTGAGGTTGCAAATAATTTTTTTTCTAGATTAAGTGTAAAGAATGTGTTTTCTTGGGCTGCTATTATTGGTTTGAATTGTAG AATGGGTTTCTATAGAGAAGCTTTAATGGGTCTTTGTGAGATGATAGATACTGGGATTCTGGCTGACAATTTTGTGGTGCCTAATATTTTGAAGGCATGT GCTGCATTGCAGTGGATTTCGTTTGGGAGAGGGGTTCATGGGTATGTAGTGAAAATGGGTTTTGATAGGTGTGTGTTTGTTTCAAGTAGTCTTGTGGATG CGTATGGAAAATGTGGGATTTTAGAGGATGCAAGGAAGGTGTTTGATAATATGTCTGACAAGAATGTAGTTACATGGAACTCCATGATTGGAAGTTATGT CCAAAATGGGTTCGATGTGGAAGCAGCACGAGTGTTTTCTGAGATGAGGTTGGAAGATGTTGAGCCCAATCAAGTTACATTATTGAGCTTTCTTTCAGCT TCAGCTAATTTAGGTGCAGTTGAAGAGGGTAAGCAAGCCCATGCGATTGCTGTTTTAGGTGGATATGAACTGGACAGCATCTTGGGTGGTTCAATTTTGA ACTTCTATTCTAAGGTTGGGCTAATCAAGGATGCTGAGTTAGTCTTTGGTATGATGCTTGAAAAAGATGCAGTTGCTTGGAATTTGCTCATTTCTAGCTA TGTGCAATATGGCCAAGTTGAAAAGGCGCTTGATTTGTGCCATTTGATGAGATTAGAGAACATGAGATTTGACTCTGTGACACTGGCATCCATATTATCT GCCTGTTCTATTATGGGAAATATAGAACTTGGTAAAGAGGGGCACTGTTATTGTATTAGAAACTATCTTGTATCTGATTTAGCTGTGGCTAATAGTATGA TAGATATGTATGCCAAATGTGAAAAAATTGCAGATGCAAGGCACGTTTTCAACTCTACAATGAACAAAGATCTTCTATTATGGAATACTCTATTGACTGC TTATGCAGAGCTTGGTGTAACTGGAGAAGTCTTGAAGCTGTTTTATGGGATGCAGTTGGAAAGTGTGCCACCAAATGTGATGTCATGGAATGCTGTGATT TTGGGATTTATTAGAAATGGCCAGATCAATGAGGCTCAAGATATGTTCTCACATATGCAGGCTGTTGGCATCCATCCGAACTTGATGACATTTACTACCC TCATCTGTGGTCTGGTTCAAAATGGTTTTGGCAATGAGGCCATTCTGGTATTCCAGAAAATGCAAGAATGTGGGATAAGAGCTAATCTCCCAATCATCAT TAGCACAATCTCAGCTTGTACAGATGTGGCATCATTGCAATATGGAAGGGCCATTCATGGCCATATCTTAAGGCATGACTTATTGTCACCTATTCCAGTT GCAACTGCTTTAGCGGAAATGTATTCCAAATGTGGAAATATGGACCAAGCTAAGAGGGTTTTGGTGTGA
AA sequence Show only first row Show all	>Potri.006G155400.1 pacid=42768627 polypeptide=Potri.006G155400.1.p locus=Potri.006G155400 ID=Potri.006G155400.1.v4.1 annot-version=v4.1 MASLAFTPTPTPKLDLFHSKAKPTKSFKKVIRKPPHLSMPQIQNKNCQSNLQQSYFNTIFSLCGQGQIQAAFKILTEMDRRKIPIGPDIYGLLLQGCLYD RALFMGQQIHSRIIKIGDSLATNEYLETKLFIFYAKCHLFEVANNFFSRLSVKNVFSWAAIIGLNCRMGFYREALMGLCEMIDTGILADNFVVPNILKAC AALQWISFGRGVHGYVVKMGFDRCVFVSSSLVDAYGKCGILEDARKVFDNMSDKNVVTWNSMIGSYVQNGFDVEAARVFSEMRLEDVEPNQVTLLSFLSA SANLGAVEEGKQAHAIAVLGGYELDSILGGSILNFYSKVGLIKDAELVFGMMLEKDAVAWNLLISSYVQYGQVEKALDLCHLMRLENMRFDSVTLASILS ACSIMGNIELGKEGHCYCIRNYLVSDLAVANSMIDMYAKCEKIADARHVFNSTMNKDLLLWNTLLTAYAELGVTGEVLKLFYGMQLESVPPNVMSWNAVI LGFIRNGQINEAQDMFSHMQAVGIHPNLMTFTTLICGLVQNGFGNEAILVFQKMQECGIRANLPIIISTISACTDVASLQYGRAIHGHILRHDLLSPIPV ATALAEMYSKCGNMDQAKRVLV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55740		CRR21	chlororespiratory reduction 21...		Potri.006G155400 [exp]	0	1
AT2G21340			MATE efflux family protein (.1...		Potri.009G122600 [exp]	4.35	0.9608
AT5G13410			FKBP-like peptidyl-prolyl cis-...		Potri.001G068300 [exp]	4.35	0.9737
AT3G09210		PTAC13	plastid transcriptionally acti...		Potri.006G094800 [exp]	7.87	0.9736
AT5G44600			S-adenosyl-L-methionine-depend...		Potri.001G073000 [exp]	8.12	0.9660
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Potri.014G118500 [exp]	8.66	0.9601
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.018G071800 [exp]	9.48	0.9717
AT5G22620			phosphoglycerate/bisphosphogly...		Potri.011G052200 [exp]	10.24	0.9728
AT3G26900		ATSKL1	Arabidopsis thaliana shikimate...		Potri.017G062800 [exp]	11.48	0.9720	SK1
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Potri.013G026400 [exp]	11.74	0.9712
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Potri.013G009400 [exp]	12.44	0.9581	VP2.2

Compare expression of checked genes

Potri.006G155400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.