Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24420 332 / 5e-115 alpha/beta-Hydrolases superfamily protein (.1) AT3G03990 245 / 6e-81 alpha/beta-Hydrolases superfamily protein (.1) AT4G37470 219 / 1e-70 alpha/beta-Hydrolases superfamily protein (.1) AT5G19850 56 / 9e-09 alpha/beta-Hydrolases superfamily protein (.1) AT1G80280 53 / 8e-08 alpha/beta-Hydrolases superfamily protein (.1) AT4G24160 48 / 3e-06 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G12830 47 / 6e-06 alpha/beta-Hydrolases superfamily protein (.1) AT1G52750 45 / 3e-05 alpha/beta-Hydrolases superfamily protein (.1) AT3G10840 43 / 0.0001 alpha/beta-Hydrolases superfamily protein (.1) AT4G36530 43 / 0.0001 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G062700 [exp] 288 / 5e-98 AT3G24420 253 / 3e-84 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G118900 [exp] 249 / 1e-82 AT3G03990 440 / 4e-158 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G016500 [exp] 239 / 2e-78 AT3G03990 434 / 1e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G145000 [exp] 232 / 9e-76 AT4G37470 468 / 7e-169 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G052000 [exp] 231 / 3e-75 AT4G37470 451 / 3e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G219700 [exp] 50 / 8e-07 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G121000 [exp] 49 / 2e-06 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G235200 [exp] 47 / 7e-06 AT4G24160 645 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.019G063900 [exp] 47 / 7e-06 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033087 [exp] 354 / 1e-123 AT3G24420 281 / 3e-95 alpha/beta-Hydrolases superfamily protein (.1) Lus10017735 [exp] 333 / 3e-115 AT3G24420 290 / 2e-98 alpha/beta-Hydrolases superfamily protein (.1) Lus10017296 [exp] 250 / 8e-83 AT3G03990 232 / 7e-76 alpha/beta-Hydrolases superfamily protein (.1) Lus10013541 [exp] 244 / 1e-80 AT3G03990 234 / 7e-77 alpha/beta-Hydrolases superfamily protein (.1) Lus10018686 [exp] 244 / 2e-80 AT3G03990 448 / 4e-161 alpha/beta-Hydrolases superfamily protein (.1) Lus10014859 [exp] 231 / 2e-75 AT4G37470 442 / 5e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10019303 [exp] 219 / 7e-71 AT4G37470 433 / 4e-155 alpha/beta-Hydrolases superfamily protein (.1) Lus10037651 [exp] 211 / 1e-67 AT4G37470 414 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1) Lus10007737 [exp] 132 / 1e-36 AT3G03990 227 / 2e-73 alpha/beta-Hydrolases superfamily protein (.1) Lus10015633 [exp] 115 / 1e-31 AT4G37470 188 / 1e-60 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.006G155500.1 pacid=42769830 polypeptide=Potri.006G155500.1.p locus=Potri.006G155500 ID=Potri.006G155500.1.v4.1 annot-version=v4.1 ATGGTGGTGCCGGAAAAGGGTCTTTCAGGAGCCTTGAATGCAAGAGTTACAGGCTCCGGCAACGAAGCCATAATTCTTGCACATGGGTTTGGAGGAGACC AGTCTGTATGGGATAAAATCGTTCCCCGCTTGGCTAAGCATTGTCGGGTACTTGTTTTTGACTGGATCTTTTCTGGTGCTATAAAAGATCCAAATCTCTT TGACCCTGTTAAGTACTCATCATATGATGCTTTTGCAAATGACTTGATCAGTCTCATGGATGAGCTGGACTTGAAATCATCTGTTCTTGTAGGCCACTCC ATGTCTGGTATGATTGGATGCATCGCTTCCATTAAAAGGCCTGATCTTTTTAAGAAGCTCATACTTGTTGGAACTTCTCCCAGGTACATCAATGCTGATG ATTATGAAGGAGGTTTCAGTAACTCGGAGGTTGAGGATATCATTTCAAACATAGAATCCAACTACTACAACTGGGCTCAAGCCTTTGCTTCTGTTGTTGT CGATGCAAACGATCCTCCCTCGGTTGACATGTTCTCAAAATGCTTGCAAAGAATGAGACCTGAGTTTGCCGTCCCTGTAGCCAAAACTGTTTTTTACTGT GATGAAAGGGACATTCTTGAGAAGGTTTTGACACCATGCATTATAGTCCAGACCACTAGAGACATTGTAGTGCCAAATTCAGTTGCTTACTACATGCAGG AGAAGATCAAAGGGAAATCTACGGTTGAGATCATTGAAACTGATGGGCATTTTCCGCATCTAACTGCACACCAGCAGCTCCTTGACGTGCTTATTGCGGC CATGAGCTTAAATGAGCCTAAAATTATCTCCTCGTGA
AA sequence Show only first row Show all	>Potri.006G155500.1 pacid=42769830 polypeptide=Potri.006G155500.1.p locus=Potri.006G155500 ID=Potri.006G155500.1.v4.1 annot-version=v4.1 MVVPEKGLSGALNARVTGSGNEAIILAHGFGGDQSVWDKIVPRLAKHCRVLVFDWIFSGAIKDPNLFDPVKYSSYDAFANDLISLMDELDLKSSVLVGHS MSGMIGCIASIKRPDLFKKLILVGTSPRYINADDYEGGFSNSEVEDIISNIESNYYNWAQAFASVVVDANDPPSVDMFSKCLQRMRPEFAVPVAKTVFYC DERDILEKVLTPCIIVQTTRDIVVPNSVAYYMQEKIKGKSTVEIIETDGHFPHLTAHQQLLDVLIAAMSLNEPKIISS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24420			alpha/beta-Hydrolases superfam...		Potri.006G155500 [exp]	0	1
AT5G02540			NAD(P)-binding Rossmann-fold s...		Potri.006G083900 [exp]	1.41	0.9629
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Potri.006G229300 [exp]	3.74	0.9301	gdcP1,Pt-GDCP.2
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.018G012900 [exp]	4.24	0.9506
AT5G19850			alpha/beta-Hydrolases superfam...		Potri.003G219700 [exp]	4.24	0.9563
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Potri.018G069100 [exp]	6.48	0.9356
AT2G25780			Protein of unknown function (D...		Potri.006G237300 [exp]	7.21	0.9178
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Potri.004G052500 [exp]	7.41	0.9460
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.018G012600 [exp]	10.58	0.9279
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.018G012100 [exp]	12.24	0.9159
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.019G023012 [exp]	17.02	0.9252

Compare expression of checked genes

Potri.006G155500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.