Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08510 614 / 0 FATB fatty acyl-ACP thioesterases B (.1) AT4G13050 270 / 3e-87 Acyl-ACP thioesterase (.1) AT3G25110 269 / 4e-87 ATFATA fatA acyl-ACP thioesterase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G157200 [exp] 827 / 0 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.018G072700 [exp] 740 / 0 AT1G08510 611 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.001G177900 [exp] 363 / 2e-123 AT1G08510 339 / 5e-114 fatty acyl-ACP thioesterases B (.1) Potri.001G177600 [exp] 362 / 1e-122 AT1G08510 343 / 2e-115 fatty acyl-ACP thioesterases B (.1) Potri.012G101500 [exp] 336 / 7e-113 AT1G08510 329 / 4e-110 fatty acyl-ACP thioesterases B (.1) Potri.015G099600 [exp] 327 / 2e-109 AT1G08510 330 / 2e-110 fatty acyl-ACP thioesterases B (.1) Potri.010G117400 [exp] 309 / 3e-102 AT1G08510 294 / 2e-96 fatty acyl-ACP thioesterases B (.1) Potri.012G051400 [exp] 305 / 9e-101 AT1G08510 297 / 1e-97 fatty acyl-ACP thioesterases B (.1) Potri.002G245600 [exp] 258 / 2e-82 AT3G25110 521 / 0.0 fatA acyl-ACP thioesterase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017751 [exp] 651 / 0 AT1G08510 602 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10033072 [exp] 650 / 0 AT1G08510 605 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10013480 [exp] 296 / 6e-97 AT1G08510 287 / 2e-93 fatty acyl-ACP thioesterases B (.1) Lus10007942 [exp] 295 / 2e-96 AT1G08510 288 / 6e-94 fatty acyl-ACP thioesterases B (.1) Lus10035900 [exp] 289 / 6e-95 AT1G08510 278 / 1e-90 fatty acyl-ACP thioesterases B (.1) Lus10035901 [exp] 285 / 4e-93 AT1G08510 269 / 7e-87 fatty acyl-ACP thioesterases B (.1) Lus10025763 [exp] 282 / 3e-92 AT1G08510 270 / 1e-87 fatty acyl-ACP thioesterases B (.1) Lus10034617 [exp] 282 / 2e-91 AT1G08510 275 / 6e-89 fatty acyl-ACP thioesterases B (.1) Lus10000365 [exp] 281 / 5e-91 AT1G08510 274 / 2e-88 fatty acyl-ACP thioesterases B (.1) Lus10025762 [exp] 275 / 7e-89 AT1G08510 268 / 2e-86 fatty acyl-ACP thioesterases B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [poplar] [flax] HotDog PF01643 [poplar] [flax] Acyl-ACP_TE Acyl-ACP thioesterase CL0050 [poplar] [flax] PF12590 [poplar] [flax] Acyl-thio_N Acyl-ATP thioesterase
Representative CDS sequence Show only first row Show all	>Potri.006G155800.2 pacid=42770700 polypeptide=Potri.006G155800.2.p locus=Potri.006G155800 ID=Potri.006G155800.2.v4.1 annot-version=v4.1 ATGGTTGCCGCTGCAGCTGCTTCATCATTTTTCCCAGTTCCTTCGCCATCTGGAGATGCCAAGGCCTCCAAGTTTGGTAGTGTGTCTGCAAGTTTGGGAG GAATCAAAACGAAATCTGCTTCCTCTGGGGCTTTGCAAGTTAACACAAATGCCCAAGCTCCTCCAAAGATAAATGGCCCTCCAGTTGGCTTGACAGCATC AGTGGAAACTCTGAAGAATGAGGATGTTGTGTCGTCACCGGCACCTCGGACGTTCATCAACCAATTACCTGATTGGAGCATGCTTCTTGCTGCAATTACA ACCATGTTTTTGGCAGCAGAGAAGCAGTGGATGATGCTTGATTGGAAACCAAAGCGACCTGATATGCTTATTGACCCCTTTGGTATTGGGAGAATTGTCC AAGATGGTCTTGTCTTCCGCCAGAATTTCTCAATTAGGTCATATGAAATTGGTGCAGATCGTACAGCATCTATAGAGACGTTGATGAACCATTTACAAGA AACTGCACTTAATCATGTTAAGACTGCTGGGCTCCTTGGCGATGGATTTGGTGCAACCCCAGAGATGTCCAAAAGGAACCTGATATGGGTGGTAACTCGT ATGCAGATTCTGGTAGATCGTTATCCTACATGGGGTGATGTTGTTCAAGTAGATACTTGGGTGAGTGCATCAGGAAAGAATGGTATGCGCCGTGATTGGC TTCTCCGTGATGCTAAAACTGGTGAAACGTTGACCAGAGCCTCCAGTGTGTGGGTGATGATGAATAAAGTGACAAGGAGGTTATCCAAAATTCCTGAAGA AGTTCGAGGGGAAATAGAGCCTCATTTTCTGACTTCTGATCCTGTTGTGAATGAGGACAGCAGAAAACTTCCAAAAATTGATGACAATACAGCGGACTAT ATCTGCGAAAGTCTAACTCCTAGATGGAATGATTTAGATGTCAACCAACATGTTAACAATGTGAAGTACATAGGCTGGATCCTTGAGAGCGCTCCTCCAC CAATCATGGAGAGTCATGAGCTTGCTGCCATTACTTTGGAGTACAGGAGGGAGTGTGGCAGGGACAGCGTGCTGCAGTCCTTGACTGCTGTATCTGACAC TGGCATTGGAAATTTAGGCAGCCCTGGTGAAGTTGAGTTCCAACACTTGCTCCGGTTTGAGGAGGGTGCTGAGATTGTGAGGGGAAGGACTGAGTGGAGA CCCAAACATGCCGACAATTTTGGTATCATGGGTCAGATCCCAGCTGTGAGCGCTTAA
AA sequence Show only first row Show all	>Potri.006G155800.2 pacid=42770700 polypeptide=Potri.006G155800.2.p locus=Potri.006G155800 ID=Potri.006G155800.2.v4.1 annot-version=v4.1 MVAAAAASSFFPVPSPSGDAKASKFGSVSASLGGIKTKSASSGALQVNTNAQAPPKINGPPVGLTASVETLKNEDVVSSPAPRTFINQLPDWSMLLAAIT TMFLAAEKQWMMLDWKPKRPDMLIDPFGIGRIVQDGLVFRQNFSIRSYEIGADRTASIETLMNHLQETALNHVKTAGLLGDGFGATPEMSKRNLIWVVTR MQILVDRYPTWGDVVQVDTWVSASGKNGMRRDWLLRDAKTGETLTRASSVWVMMNKVTRRLSKIPEEVRGEIEPHFLTSDPVVNEDSRKLPKIDDNTADY ICESLTPRWNDLDVNQHVNNVKYIGWILESAPPPIMESHELAAITLEYRRECGRDSVLQSLTAVSDTGIGNLGSPGEVEFQHLLRFEEGAEIVRGRTEWR PKHADNFGIMGQIPAVSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.006G155800 [exp]	0	1
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.006G157200 [exp]	1.41	0.8544	FATB1.1
AT2G42320			nucleolar protein gar2-related...		Potri.006G056800 [exp]	4.58	0.8535
AT4G16650			O-fucosyltransferase family pr...		Potri.001G157400 [exp]	15.87	0.8071
AT1G09580			emp24/gp25L/p24 family/GOLD fa...		Potri.003G019300 [exp]	16.43	0.7909
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Potri.003G120000 [exp]	28.28	0.8459
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Potri.001G322500 [exp]	31.30	0.8464	Pt-DET3.1
AT5G18940			Mo25 family protein (.1.2)		Potri.010G028700 [exp]	32.74	0.8255
AT3G13772		AtTMN7	transmembrane nine 7 (.1)		Potri.003G038700 [exp]	38.60	0.8333
AT5G25510			Protein phosphatase 2A regulat...		Potri.018G034200 [exp]	39.57	0.8413
AT5G04420			Galactose oxidase/kelch repeat...		Potri.010G230300 [exp]	40.29	0.8398

Compare expression of checked genes

Potri.006G155800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.