Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24495 1348 / 0 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) AT4G02070 246 / 1e-66 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT3G18524 180 / 5e-46 ATMSH2, MSH2 MUTS homolog 2 (.1) AT4G25540 158 / 5e-39 ATMSH3, MSH3 homolog of DNA mismatch repair protein MSH3 (.1) AT4G17380 138 / 3e-33 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) AT3G20475 115 / 5e-26 ATMSH5 MUTS-homologue 5 (.1) AT3G24320 103 / 4e-22 CHM1, ATMSH1, CHM, MSH1 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) AT5G54090 87 / 3e-17 DNA mismatch repair protein MutS, type 2 (.1) AT1G65070 79 / 1e-14 DNA mismatch repair protein MutS, type 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G159200 [exp] 2170 / 0 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.014G121701 [exp] 232 / 4e-62 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.014G121601 [exp] 181 / 3e-48 AT4G02070 563 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.012G060000 [exp] 181 / 2e-46 AT3G18524 1438 / 0.0 MUTS homolog 2 (.1) Potri.015G142900 [exp] 164 / 8e-41 AT4G25540 1313 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Potri.001G156200 [exp] 153 / 6e-38 AT4G17380 1226 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Potri.008G191051 [exp] 119 / 1e-29 AT4G02070 294 / 1e-91 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.008G190950 [exp] 112 / 8e-27 AT4G02070 410 / 2e-133 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.011G089500 [exp] 117 / 2e-26 AT3G20475 1264 / 0.0 MUTS-homologue 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017724 [exp] 1408 / 0 AT3G24495 1267 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10033095 [exp] 1269 / 0 AT3G24495 1138 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10010010 [exp] 245 / 3e-66 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10042967 [exp] 176 / 7e-45 AT3G18524 1479 / 0.0 MUTS homolog 2 (.1) Lus10005743 [exp] 169 / 2e-42 AT4G25540 1305 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Lus10032469 [exp] 166 / 1e-41 AT3G18524 1449 / 0.0 MUTS homolog 2 (.1) Lus10027452 [exp] 157 / 2e-41 AT4G25540 447 / 1e-148 homolog of DNA mismatch repair protein MSH3 (.1) Lus10025030 [exp] 160 / 1e-39 AT4G02070 350 / 7e-104 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10028966 [exp] 143 / 4e-36 AT4G17380 413 / 3e-137 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Lus10007489 [exp] 118 / 5e-27 AT4G17380 1205 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00488 [poplar] [flax] MutS_V MutS domain V CL0023 [poplar] [flax] PF01624 [poplar] [flax] MutS_I MutS domain I CL0023 [poplar] [flax] PF05188 [poplar] [flax] MutS_II MutS domain II CL0023 [poplar] [flax] PF05192 [poplar] [flax] MutS_III MutS domain III
Representative CDS sequence Show only first row Show all	>Potri.006G156314.1 pacid=42767227 polypeptide=Potri.006G156314.1.p locus=Potri.006G156314 ID=Potri.006G156314.1.v4.1 annot-version=v4.1 ATGCCGCGCCAAAAATCGATACTCTCGTTCTTCCAAAAACCCTCGCAGCCCAGTCAGAGCTCCGACGCCGGAGAAAGGACCGATGGTCGGCAAGCTCCTC TGTTCTCGGCGAAGCAACATAATCAAAACGTGTCTCAACCTGCGATTCATGGACCGGTGGACTCGTCTATTGAAATTAGAGGAACTGACACGCCACCAGA AAAGGTGCCACGTCAGATATTACCGGTGAACATCAAGGAGAACGAGGAGGCCAAAGTTGCTTCGCTTTTCTCGAGCATAATGCATAAGTTCGTTAAGGTC GATGACAGAGAAAAACCTAATGGGAGGAACCAGGTTCATTCTGCTAATGTTTGCTCTACATCTGTTACATTTACTATCCCAAAAGAATTGCCTCAGCATG GAATGGATACACTGTACTCTGAGAAAGACAATGGTTTTAGTTCCAGTGGCATGGTTGATCAAACGAGTGTCTTGAATATTGAAAGTGTAAATGATGTTCC TGGGCCACATACACCAGGCATGCGACCCCTAGTTCCTCGTCTGAAGAGAATTCTAGAGGACGTTCCTAAGTTTGAGGATAAGAATGGTTGTTCCTTCCTA AACTCTAGCAAAAGAGTGAAACCACTACAGGACCCAGCTTCCTTGATAAAAAATCATGAGGAAATATCTAATTCAACAAGCAAGTTTGAATGGCTTGACC CTGCCCAAATCAGGGATGCCAATAGGAGAAGGCCCAATGATCCTCTCTATGACAAAAAGACGCTGTACTTACCACCTGATGCATTGAAGAAAATGTCAGC TTCTCAAAAGCAATACTGGACTGTCAAATCTCAGTACATGGATGTTCTACTTTTCTTTAAAGTGGGAAAATTCTATGAGCTCTATGAACTGGATGCTGAA ATTGGTCACAAAGAGCTTGATTGGAAAATGACATTAAGCGGTGTGGGGAAATGTCGGCAGGTTGGTATATCTGAAAGTGGGATTGACGATGCTGTTGAAA AGCTGGTAGCTCGTGGATATAAAGTTGGAAGAGTGGAGCAATTGGAAACATCTGATCAAGCAAAATCTAGGGGTGCAAATTCTGTAATCCAAAGAAAATT GGTACAAGTTGTCACCCCATCAACCACAACTGGACATAATATGGGGCCTGATGCTGTTCACCTTCTTGCCATAAAAGAGGGAAACTATGGGGTGGATAAT GGTGCAACTGCTTATGGGTTTGCTTTTGTTGATTGTGCTGCTCTACGAGTTTGGGTTGGATCAATCAATGATGATGCGTCACATGCTGCTTTGGGGGCAT TATTGATGCAAATTTCACCTAAGGAAGTCATATATGAAAATAGAGAGCTTTCCAGAGGCGCTCAGAAAGAACTTAGGAAGTACTCATTAATAGGTTCTAC AGCACTGCAATTGTCACCAGTGCTGCCAGGCACTGATTTTGTGGATGCTTCTGAAGTTAAAAATTTGATTCAATCGAAGGATTACTTTAAATGGTCTACA AATCCATGGAACCATGCACTTGACAGTATAATGCACCAGGATATATCTCTATGTGCTCTTGGCGGGCTTATTGGTCATCTATCCAGATTGATGTTTGATG ATGTTTTAAGGAATGCAGATATTCTACCCTACCAAGTTTATAAGGGTTGCCTTAGAATGGATGGGCAGACTCTAGTAAATCTGGAGGTTTTTAGTAACAG TGCTGATGGTGGTTCATCAGGTACTTTGTTTAACTATCTTGATAACTGCGTGACATCATCTGGTAAGCGGCTTTTGAGGAATTGGATCTGCCATCCACTG AAACATGTTGAAGGCATTAATAATAGGCTTGATGTAATTGAAAATCTAATGGCTCGTTCAGAAATTATGTTAGTTATTGCTCAATATCTTCGCAAGCTTC CAGATTTAGAAAGAATGCTTGGGCGAGTTAAGGTTAGCTTTCAGGCATCAGGTTCTCTTGCACTGCCCTTGATTAGCAAAAAATTGTTGAAACAAAGAGT GAAAGTGTTCGGGTCTCTGGTGAAAGGGCTTCGGAATGGAATGGATTTGTTATTGCTATTACTGAAGGAAGAGCAACTAATTTCATCATTATCAAAAAAT TTTAAACTTCCAGAGCTTCTTGGTAGTAATGGGCTTGAAAAATTCCTTGTGCAATTTGAAGCAGCTGTAGATAGTGAATTCCCAAACTACCAGAATCGTG ATGTGACAGATTCAGAGGCTGGAATGCTTTCTGTGCTGATTGAGTTATTTATTGAGAAAGCTGCACAGTGGGGTGAAGTCATTCATGCAATCAATTGTAT TGATGTGCTTAGATCTTTCGCAGTCACAGCAAGCATGTCATGTGGAGCTATGTGTAGACCTGTTATTTTGCCTGATTCAAAATCCATTTCTTTCTGTGAG GGGGAAGGGGGGCCTGTACTTAAGATTAAAGGGTTATGGCACCCATTTGCCCTTGGAGAGAATGGATTGCCTGTCCCAAATGATGTGTTCCTTGGTGAGG ATTCAGATAGCCAACATCCCCGCACTGTGTTGCTGACTGGACCAAATATGGGTGGAAAATCAACACTTCTGCGTGCCACATGTCTAGCTGTTATACTAGC ACAGCTTGGTTGTTTCGTTCCCGGTGAGAAGTGTGTTCTCTCACTTGCTGACATAATTTTTACACGGCTTGGTGCCACTGATCGAATAATGACAGGCGAG AGTACATTCTTCATTGAGTGCACAGAAACAGCTTCGGTGCTTCAAAATGCCACTCAAGATTCCCTTGTCCTTCTTGATGAACTGGGTCGAGGAACAAGCA CTTATGATGGATACGCCATTGCATATGCTGTATTCCGCCATCTTGTTGAGAAGATAAACTGTCGATTGCTTTTTGCAACACACTATCACCCGCTCACAAA AGAATTTGCTTCTCATCCACATGTTTCATTACAATACATGGCTTGTGCATTCAAGTCAAAACCTGAAAGCTATTCTAAAAGCGACCGGGACCTTGTCTTC TTGTACCGGCTTGCATCTGGAGCATGCCCAGGGAGCTACGGATTGCAAGTGGCAACTATGGCTGGCATTCCTGAGCATGTTGTTGAAGCTGCTTCACATG CTGGTCAACTGATGAAAAATTCAACTGGAGAAAGTTTCAAGTCAAGTGAGCGCAGGTCTGAGTTCTCAACTCTCCATGAAGAGTGGTTGAAGACCCTAGT AAATGTCTCACGAATCAGAGATTGTAATTTTGATGATGATGATGTTTATGACACATTGTTTTGCTTGTGGCATGAGTTGAAGAGCTCGTATGAATCTTGT AGCTCGAAGAGTAGATAG
AA sequence Show only first row Show all	>Potri.006G156314.1 pacid=42767227 polypeptide=Potri.006G156314.1.p locus=Potri.006G156314 ID=Potri.006G156314.1.v4.1 annot-version=v4.1 MPRQKSILSFFQKPSQPSQSSDAGERTDGRQAPLFSAKQHNQNVSQPAIHGPVDSSIEIRGTDTPPEKVPRQILPVNIKENEEAKVASLFSSIMHKFVKV DDREKPNGRNQVHSANVCSTSVTFTIPKELPQHGMDTLYSEKDNGFSSSGMVDQTSVLNIESVNDVPGPHTPGMRPLVPRLKRILEDVPKFEDKNGCSFL NSSKRVKPLQDPASLIKNHEEISNSTSKFEWLDPAQIRDANRRRPNDPLYDKKTLYLPPDALKKMSASQKQYWTVKSQYMDVLLFFKVGKFYELYELDAE IGHKELDWKMTLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRVEQLETSDQAKSRGANSVIQRKLVQVVTPSTTTGHNMGPDAVHLLAIKEGNYGVDN GATAYGFAFVDCAALRVWVGSINDDASHAALGALLMQISPKEVIYENRELSRGAQKELRKYSLIGSTALQLSPVLPGTDFVDASEVKNLIQSKDYFKWST NPWNHALDSIMHQDISLCALGGLIGHLSRLMFDDVLRNADILPYQVYKGCLRMDGQTLVNLEVFSNSADGGSSGTLFNYLDNCVTSSGKRLLRNWICHPL KHVEGINNRLDVIENLMARSEIMLVIAQYLRKLPDLERMLGRVKVSFQASGSLALPLISKKLLKQRVKVFGSLVKGLRNGMDLLLLLLKEEQLISSLSKN FKLPELLGSNGLEKFLVQFEAAVDSEFPNYQNRDVTDSEAGMLSVLIELFIEKAAQWGEVIHAINCIDVLRSFAVTASMSCGAMCRPVILPDSKSISFCE GEGGPVLKIKGLWHPFALGENGLPVPNDVFLGEDSDSQHPRTVLLTGPNMGGKSTLLRATCLAVILAQLGCFVPGEKCVLSLADIIFTRLGATDRIMTGE STFFIECTETASVLQNATQDSLVLLDELGRGTSTYDGYAIAYAVFRHLVEKINCRLLFATHYHPLTKEFASHPHVSLQYMACAFKSKPESYSKSDRDLVF LYRLASGACPGSYGLQVATMAGIPEHVVEAASHAGQLMKNSTGESFKSSERRSEFSTLHEEWLKTLVNVSRIRDCNFDDDDVYDTLFCLWHELKSSYESC SSKSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Potri.006G156314 [exp]	0	1
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Potri.006G159200 [exp]	1.00	0.9832
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Potri.001G012200 [exp]	1.73	0.9285	Pt-CALS1.3
AT1G63640			P-loop nucleoside triphosphate...		Potri.003G127800 [exp]	2.64	0.9106
AT3G18730		BRU1, MGO3, TSK	TONSOKU, MGOUN3, BRUSHY1, tetr...		Potri.007G110800 [exp]	2.82	0.9159
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Potri.003G038800 [exp]	2.82	0.9083	Pt-ATMSI4.2,NFC907
AT1G04730		CTF18	CHROMOSOME TRANSMISSION FIDELI...		Potri.001G050300 [exp]	4.47	0.9149
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Potri.014G023000 [exp]	5.83	0.8844	CYCD1.4
AT3G66658		ALDH22A1	aldehyde dehydrogenase 22A1 (....		Potri.008G106000 [exp]	7.74	0.9116	ALDH22.1
AT1G71440		TFCE, PFI	TUBULIN-FOLDING COFACTOR E, tu...		Potri.019G072700 [exp]	8.48	0.8597	Pt-PFI.1,TFCFE
AT5G15080			Protein kinase superfamily pro...		Potri.004G129000 [exp]	9.48	0.9066

Compare expression of checked genes

Potri.006G156314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.