Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13360 608 / 0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT3G24360 578 / 0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2) AT5G65940 214 / 3e-66 CHY1 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) AT2G30660 198 / 4e-60 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT2G30650 197 / 2e-59 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT4G31810 182 / 2e-53 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT1G06550 179 / 2e-52 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT3G60510 170 / 4e-49 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) AT4G16800 66 / 5e-12 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT4G16210 58 / 3e-09 ECHIA, E-COAH-2 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G155700 [exp] 776 / 0 AT4G13360 611 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.014G179000 [exp] 205 / 1e-62 AT5G65940 556 / 0.0 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.001G156900 [exp] 182 / 9e-54 AT3G60510 432 / 9e-151 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Potri.010G170200 [exp] 180 / 2e-52 AT5G65940 388 / 6e-133 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.006G277300 [exp] 172 / 7e-50 AT5G65940 397 / 1e-137 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G018800 [exp] 170 / 5e-49 AT4G31810 565 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.018G004200 [exp] 169 / 6e-49 AT5G65940 430 / 2e-150 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004150 [exp] 168 / 3e-48 AT5G65940 428 / 6e-150 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.002G057700 [exp] 165 / 3e-47 AT1G06550 592 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019396 [exp] 630 / 0 AT4G13360 607 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10043253 [exp] 587 / 0 AT4G13360 565 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10038717 [exp] 197 / 6e-58 AT5G65940 565 / 0.0 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Lus10010685 [exp] 180 / 1e-52 AT4G31810 575 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10020758 [exp] 179 / 2e-52 AT1G06550 602 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10007422 [exp] 179 / 2e-52 AT4G31810 568 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10007334 [exp] 174 / 1e-50 AT1G06550 595 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10028182 [exp] 171 / 5e-50 AT3G60510 453 / 6e-160 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Lus10042883 [exp] 154 / 9e-44 AT4G31810 394 / 4e-137 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10010994 [exp] 84 / 6e-18 AT4G16800 351 / 2e-121 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [poplar] [flax] ClpP_crotonase PF00378 [poplar] [flax] ECH_1 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Potri.006G156350.1 pacid=42769810 polypeptide=Potri.006G156350.1.p locus=Potri.006G156350 ID=Potri.006G156350.1.v4.1 annot-version=v4.1 ATGGCTGCCGCTGCCGTCGATGAATTCGTTAAGGGTAATATTCATCCAAACGGGGTCGCTGTTCTCACTCTCGATCGCCCCAAAGCCCTCAACGCCATGA ACTTAGATATGGATATAAAGTACAAAACATTTATGGATGAATGGGAATCGGATCCAAGGGTCAGATGCGTTCTGGTTGAGGGAAGCTCGCCTCGTGCATT TTGTGCAGGAATGGATATTAAAGGGGTTGTTGCCGAGATTCGAAAGGACAAAAACACTCCTGTTGTGCAGAAGGTGTTCACTGCAGAATATTCTTTAATA TGCAAAATTTCTGAGTACAAAAAACCATATGTGTCCTTGATGGATGGCGTAACAATGGGCTTTGGAATTGGGCTATCTGGTCATGGTCGGTACCGGATTG TAACAGAGAGGACAGTGCTTGCTATGCCAGAAAATGGTATTGGCTTGTTCCCAGATGTTGGCTTTTCCTATATAGCAGCAAAAAGTCCAGGAGAAGGATC AGTTGGCAATTATCTTGCATTGACTGGAAAGAGGATTTCTACACCCTCTGATGCACTATTTGTAGGTCTTGGATCACACTATGTTCCATCTGGGAATTTA GTCCAGCTGAAGGAGGCCCTTTTGCAAATTACCTTTTCCAATGACCCACATCAGGACATCAACGCACTTTTAGCAGAGTATGGTCATGACCCTGAGTCTG AGTCCCAGTTGAAGTCACTTTTACCTCGAATAATCTCAACCTTTGGTCCAAATAAGTCAGTGGAGGAGATAATTGAAAAGTTGAAAAGTCATCAGCTGAG TGCTGATCCTAAAGTGGTGGAGTGGGCAAATGATGCTCTTCAAGGTATTGGAAAAGGTGCTCCCTTCTCTCTATGCTTGACACAGAAATACTTCTCTAGA GTTGCATTTGCCTTTGGTAAAATCAGCAATGAATTATCTACGCTAAGTGGTGTGATGAAAACAGAATATCGCATTGCCCTTAGGTCTTCTCTGCGCAATG ATTTTGCTGAAGGTGTCAGGGCAGTCTTGGTTGACAAGGATCAGAAACCAAAGTGGAATCCGTCAAGCTTGGAAGAAGTAGATCAAAGTGAAATAGAATC TCTCTTCAAACCATTGAGCCCAGAAGCTGAGTTGACAGCATGA
AA sequence Show only first row Show all	>Potri.006G156350.1 pacid=42769810 polypeptide=Potri.006G156350.1.p locus=Potri.006G156350 ID=Potri.006G156350.1.v4.1 annot-version=v4.1 MAAAAVDEFVKGNIHPNGVAVLTLDRPKALNAMNLDMDIKYKTFMDEWESDPRVRCVLVEGSSPRAFCAGMDIKGVVAEIRKDKNTPVVQKVFTAEYSLI CKISEYKKPYVSLMDGVTMGFGIGLSGHGRYRIVTERTVLAMPENGIGLFPDVGFSYIAAKSPGEGSVGNYLALTGKRISTPSDALFVGLGSHYVPSGNL VQLKEALLQITFSNDPHQDINALLAEYGHDPESESQLKSLLPRIISTFGPNKSVEEIIEKLKSHQLSADPKVVEWANDALQGIGKGAPFSLCLTQKYFSR VAFAFGKISNELSTLSGVMKTEYRIALRSSLRNDFAEGVRAVLVDKDQKPKWNPSSLEEVDQSEIESLFKPLSPEAELTA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13360			ATP-dependent caseinolytic (Cl...		Potri.006G156350 [exp]	0	1
AT4G13360			ATP-dependent caseinolytic (Cl...		Potri.006G155700 [exp]	1.00	0.8655
AT5G19760			Mitochondrial substrate carrie...		Potri.003G220400 [exp]	1.41	0.8362
AT1G51410			NAD(P)-binding Rossmann-fold s...		Potri.009G052000 [exp]	3.00	0.7977	CCRL4
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Potri.004G168000 [exp]	3.46	0.7629
AT3G06170			Serinc-domain containing serin...		Potri.008G201900 [exp]	7.74	0.7194
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Potri.004G018200 [exp]	8.48	0.6934
AT1G51200			A20/AN1-like zinc finger famil...		Potri.016G051700 [exp]	10.39	0.7459
AT5G08530		CI51	51 kDa subunit of complex I (....		Potri.010G057400 [exp]	10.95	0.7298
AT1G30540			Actin-like ATPase superfamily ...		Potri.001G466900 [exp]	11.61	0.7031
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Potri.010G253500 [exp]	15.71	0.7081

Compare expression of checked genes

Potri.006G156350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.