Plant FIBer expression Database

Potri.006G157000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G24350 295 / 1e-98 ATSYP32, SYP32 syntaxin of plants 32 (.1.2)
AT5G05760 126 / 2e-33 ATSYP31, ATSED5, SYP31 T-SNARE SED 5, syntaxin of plants 31 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G072400
[exp]
429 / 1e-151 AT3G24350 332 / 3e-113 syntaxin of plants 32 (.1.2)
Potri.010G191100
[exp]
242 / 6e-78 AT5G05760 395 / 8e-138 T-SNARE SED 5, syntaxin of plants 31 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033080
[exp]
403 / 8e-141 AT3G24350 432 / 1e-152 syntaxin of plants 32 (.1.2)
Lus10017741
[exp]
387 / 5e-135 AT3G24350 410 / 2e-144 syntaxin of plants 32 (.1.2)
Lus10028277
[exp]
247 / 8e-80 AT5G05760 417 / 7e-147 T-SNARE SED 5, syntaxin of plants 31 (.1)
Lus10040213
[exp]
247 / 8e-80 AT5G05760 418 / 4e-147 T-SNARE SED 5, syntaxin of plants 31 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0445 SNARE-fusion PF00804 Syntaxin Syntaxin
CL0445 PF05739 SNARE SNARE domain
CL0445 PF11416 Syntaxin-5_N Syntaxin-5 N-terminal, Sly1p-binding domain
Representative CDS sequence
>Potri.006G157000.8 pacid=42769138 polypeptide=Potri.006G157000.8.p locus=Potri.006G157000 ID=Potri.006G157000.8.v4.1 annot-version=v4.1
ATGATGCCGCCGGTAAAAACATCCTATCGGGACCGGACACAAGAGTTTCTGAGTGTAGCAGAGAGGCTAAAGAAATCGTTCTCATCGGCGAGCAATGCGG
CATCATCCAGTACCGGTAGCAGCACGAAGCCGGATGCTAAGCGATCTGCTGTGGCGATTCAATCCGAATTTAGTAAAAGAGCATCCATGATCGGGTATGG
GATCCACCAGACATCTCAGAAGCTGGCGAAGCTGGCAAAACTGGCGAAAAGAACATCGGTGTTTGATGATCCAACTCTGGAGATCCAAGAGTTGACAGCA
GTTATAAAACAAGATATTACTGCACTTAATGCAGCTGTAGTAGACCTCCAACTCCTTTGCAACTCCCAGAATGAAAGCGGAAACATCTCAAGTGATACTA
CAACTCATTCAACCACAGTTGTAGATAACCTAAAGAATCGCTTGATGACTGCTACAAAGGAGTTTAAAGAAGTCCTCACAACGCGGACAGAGAATCTAAA
GGTTCATGAGAACCGAAGGCAGTTGTTTTCTTCCACTGCTTCAAAAGACTCTTCAAATCCCTTTGTTCGTCAGCGTCCACTCACTTCCAGGACAGCTGCT
AGTGCAACACAGGCTCCTCCCCCTCCATGGGCCAATGCTTCTGTATCCTCATCCCAGCTAGTTCCCAGCAAATCGACAGATGTTGAGTCCCAGCCGCTTT
TGCAACAGCAGCAACAGCAAATGGTTCCACTACAAGACAGTTACATGCATAGCAGAGCTGAAGCCCTTCATAACGTGGAGTCAACAATCCATGAGCTGAG
CAACATCTTTACTCAACTAGCAACAATGGTTTCTCAGCAAGGAGAGCTGGCAATCAGGATTGACGAGAACATGGATGAGTCACTGTCAAATGTAGAGGGC
GCGCAGGGCCAACTGGTCAGGTATCTTAACAGTATTTCATCCAACCGATGGCTGATGATGAAAATATTTCTTGTACTTATTGTATTCCTCATGTTTTTCG
TTTTTTTTGTGGCATGA
AA sequence
>Potri.006G157000.8 pacid=42769138 polypeptide=Potri.006G157000.8.p locus=Potri.006G157000 ID=Potri.006G157000.8.v4.1 annot-version=v4.1
MMPPVKTSYRDRTQEFLSVAERLKKSFSSASNAASSSTGSSTKPDAKRSAVAIQSEFSKRASMIGYGIHQTSQKLAKLAKLAKRTSVFDDPTLEIQELTA
VIKQDITALNAAVVDLQLLCNSQNESGNISSDTTTHSTTVVDNLKNRLMTATKEFKEVLTTRTENLKVHENRRQLFSSTASKDSSNPFVRQRPLTSRTAA
SATQAPPPPWANASVSSSQLVPSKSTDVESQPLLQQQQQQMVPLQDSYMHSRAEALHNVESTIHELSNIFTQLATMVSQQGELAIRIDENMDESLSNVEG
AQGQLVRYLNSISSNRWLMMKIFLVLIVFLMFFVFFVA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G24350 ATSYP32, SYP32 syntaxin of plants 32 (.1.2) Potri.006G157000
[exp]
0 1
AT4G02500 ATXT2, XXT2 XYG XYLOSYLTRANSFERASE 2, ARAB... Potri.008G208000
[exp]
6.70 0.9224
AT1G09630 ATRAB-A2A, ATRA... ARABIDOPSIS RAB GTPASE A2A, RA... Potri.004G226400
[exp]
7.14 0.9163
AT2G20760 Clathrin light chain protein (... Potri.011G049500
[exp]
7.34 0.9088
AT5G03170 ATFLA11, FLA11,... ARABIDOPSIS FASCICLIN-LIKE ARA... Potri.016G088700
[exp]
8.36 0.9420 Pt-FLA11.2
AT5G03040 IQD2 IQ-domain 2 (.1.2.3) Potri.010G218100
[exp]
11.66 0.9293
AT5G18280 ATAPY2 apyrase 2 (.1.2) Potri.013G053500
[exp]
11.74 0.9359
AT2G20760 Clathrin light chain protein (... Potri.004G040100
[exp]
12.00 0.9034
AT5G03170 ATFLA11, FLA11,... ARABIDOPSIS FASCICLIN-LIKE ARA... Potri.006G129200
[exp]
12.48 0.9272 Pt-FLA11.1
AT2G43310 Ribosomal L18p/L5e family prot... Potri.007G128100
[exp]
13.56 0.9038
AT2G16595 Translocon-associated protein ... Potri.004G168500
[exp]
13.96 0.9293

Potri.006G157000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.