Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03390 626 / 0 HXXXD-type acyl-transferase family protein (.1) AT5G41040 238 / 3e-73 HXXXD-type acyl-transferase family protein (.1.2) AT3G48720 236 / 9e-73 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT1G27620 236 / 2e-72 HXXXD-type acyl-transferase family protein (.1) AT5G63560 216 / 3e-65 HXXXD-type acyl-transferase family protein (.1) AT5G48930 199 / 1e-58 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT2G40230 188 / 2e-54 HXXXD-type acyl-transferase family protein (.1) AT3G03480 179 / 6e-51 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G17540 178 / 2e-50 HXXXD-type acyl-transferase family protein (.1) AT1G28680 172 / 2e-48 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G158400 [exp] 978 / 0 AT1G03390 625 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.001G326300 [exp] 259 / 2e-81 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.015G100800 [exp] 246 / 1e-76 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.017G068500 [exp] 240 / 1e-74 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.002G032200 [exp] 238 / 3e-73 AT1G27620 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.005G230900 [exp] 228 / 2e-69 AT1G27620 607 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G166600 [exp] 213 / 7e-64 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.010G186300 [exp] 202 / 8e-60 AT2G40230 576 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.008G071200 [exp] 201 / 2e-59 AT2G40230 544 / 0.0 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017744 [exp] 724 / 0 AT1G03390 643 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10033079 [exp] 723 / 0 AT1G03390 643 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10012552 [exp] 265 / 1e-83 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10032554 [exp] 234 / 7e-72 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10043189 [exp] 229 / 4e-70 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10024278 [exp] 219 / 1e-65 AT1G27620 550 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10010786 [exp] 217 / 2e-65 AT5G48930 451 / 5e-157 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10005439 [exp] 212 / 3e-63 AT5G41040 364 / 2e-122 HXXXD-type acyl-transferase family protein (.1.2) Lus10022163 [exp] 207 / 8e-62 AT5G48930 449 / 2e-156 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10028983 [exp] 201 / 5e-59 AT2G40230 492 / 7e-173 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.006G157100.1 pacid=42770231 polypeptide=Potri.006G157100.1.p locus=Potri.006G157100 ID=Potri.006G157100.1.v4.1 annot-version=v4.1 ATGGCTTCATGGGTTGAAGAGCTCCATTTTCCTCATGTAAACATCCCTATAACAATCGCCCACCTGCTTCCGGTATCGCCTGCAGGGCCCATATCAGCTG CCCCAGGTGATAGCCTCTACCTCTCTAACCTTGACGACATCATTGGAGCTCGTGTTTTCACCCCAACTATTTATTTCTATCGATTCGATTTCTTGAATAA TTCCACCCGAAAATCTGTCATGAAAACTCTATTCGATGCTTTGTCACATGTTTTAGTTCCTTACTACCCTTTATCAGGCAGGCTTAGAGAAACCAAGAAT GGTAAGTTGGAGGTATTTTTTGAACAAGGACAAGGCGCACTCATGGTAGAGGCATACTCAGAGATGGCCTTGGATAAACTAGGAGAACTTACAGTGCCGA ATCCAGCATGGTCCCCATTGATTTTCAGGTTCCCAAACGAGGAACCCTACAAAATTCTTGACATGCCATTGCTTATAGCTCAGGTAACTCTCTTTAGCTG TGGTGGTTTTAGCCTGGGCTTAAGACTCTGCCACTGCATATGTGATGGTCTTGGTGCAATGCAATTCCTTCGTGCATGGGCTGCGACGGCGAAGTCAGGC ACTTTGGTTACAAACCCTGACCCCTGTTGGAACAGGAAATTCTTCCAGCCTCGTAATCCACCTGTGGTTAAATACCCGCATATGGAATTTATGAAAATAG AAGAAGGCTCAAGCCTAACAAGGAGTCTATGGCAAGAAAAGCCTGTGCAAAAGTGTTACCGCATTAGCCGAGAGTTTCAAGCACAATTGAAATCTGTAGC AGCTCAAACAAATGATCAGAAGTTTTCCTACACAACATTTGATGCTTTGGCAGCTCATGTTTGGAGGTCATGGGTGAAAGCGCTAGATGTAAAACCAGTG AACTATAAGCTTAGGCTTACTTTTTCAGTCAATGCTCGCAACAAGCTTAAGAACCCGCCATTGAAAGATGGTTTTTATGGCAATGTGGTATGCCTAGCAT GTGCAGTAAGCTCTGTGTATGAACTTATTACTAGACATCTCACAGAAACTGCTCATTTGGTTCACGATGCTAGGATTGGGGTGTCAGAGGAATACTTGAG ATCAACAATCGATTATGTGGAAGTGGACAGGCCGACAAGGCTTGAATTTGGTGGGAAATTGACAATAACACAATGGACAAGGTTCTCAATATATGAATGT GCAGATTTTGGATGGGGAAGGCCTATTTATGCTGGTCCAATAGACTTGACCCCAACACCACAGGTATGTGTGTTCCTGCCGGAAGGGGAGGCGGATCCCA GTGACAGGATGGTGGTGTGCATATGCTTGCCTGAGTCAGCCACCGATAAATTTAAAGAGTTCTTGAGTTCCGTAGATCAATCAAGGGATGAGGATGTTGA TAGGAATAATTAA
AA sequence Show only first row Show all	>Potri.006G157100.1 pacid=42770231 polypeptide=Potri.006G157100.1.p locus=Potri.006G157100 ID=Potri.006G157100.1.v4.1 annot-version=v4.1 MASWVEELHFPHVNIPITIAHLLPVSPAGPISAAPGDSLYLSNLDDIIGARVFTPTIYFYRFDFLNNSTRKSVMKTLFDALSHVLVPYYPLSGRLRETKN GKLEVFFEQGQGALMVEAYSEMALDKLGELTVPNPAWSPLIFRFPNEEPYKILDMPLLIAQVTLFSCGGFSLGLRLCHCICDGLGAMQFLRAWAATAKSG TLVTNPDPCWNRKFFQPRNPPVVKYPHMEFMKIEEGSSLTRSLWQEKPVQKCYRISREFQAQLKSVAAQTNDQKFSYTTFDALAAHVWRSWVKALDVKPV NYKLRLTFSVNARNKLKNPPLKDGFYGNVVCLACAVSSVYELITRHLTETAHLVHDARIGVSEEYLRSTIDYVEVDRPTRLEFGGKLTITQWTRFSIYEC ADFGWGRPIYAGPIDLTPTPQVCVFLPEGEADPSDRMVVCICLPESATDKFKEFLSSVDQSRDEDVDRNN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03390			HXXXD-type acyl-transferase fa...		Potri.006G157100 [exp]	0	1
AT1G03390			HXXXD-type acyl-transferase fa...		Potri.006G158400 [exp]	1.41	0.6189
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G016700 [exp]	15.87	0.5267
					Potri.005G064250 [exp]	29.91	0.4905
AT5G54470	CO		B-box type zinc finger family ...		Potri.004G027100 [exp]	45.82	0.4066
					Potri.004G151301 [exp]	157.00	0.3461
					Potri.011G164750 [exp]	217.23	0.3144
AT4G22080		RHS14	root hair specific 14 (.1)		Potri.004G007300 [exp]	252.44	0.3273
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Potri.006G005000 [exp]	253.02	0.3273
AT3G02100			UDP-Glycosyltransferase superf...		Potri.010G084900 [exp]	273.91	0.3150

Compare expression of checked genes

Potri.006G157100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.