Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60770 682 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02370 319 / 2e-103 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01990 286 / 3e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02150 246 / 2e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21705 237 / 2e-72 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 223 / 1e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G20710 209 / 7e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G27460 194 / 8e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09450 150 / 2e-40 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G28020 135 / 7e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G079600 [exp] 885 / 0 AT1G60770 701 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G194400 [exp] 357 / 2e-118 AT1G02370 466 / 2e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G119000 [exp] 342 / 9e-113 AT1G02370 456 / 1e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G139400 [exp] 263 / 2e-81 AT1G02150 714 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G050300 [exp] 253 / 8e-78 AT1G02150 698 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G120900 [exp] 246 / 1e-75 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G208900 [exp] 238 / 2e-72 AT4G02820 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G042500 [exp] 236 / 9e-72 AT4G21705 608 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G051500 [exp] 231 / 6e-70 AT4G21705 605 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013047 [exp] 721 / 0 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029115 [exp] 322 / 1e-107 AT1G60770 335 / 9e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021053 [exp] 327 / 2e-106 AT1G02370 494 / 3e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004173 [exp] 290 / 2e-93 AT1G02370 419 / 1e-143 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042574 [exp] 240 / 6e-73 AT4G02820 565 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022033 [exp] 230 / 2e-70 AT4G02820 468 / 9e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024781 [exp] 233 / 4e-70 AT1G02150 599 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009787 [exp] 231 / 1e-69 AT1G02150 600 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005855 [exp] 224 / 3e-67 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001213 [exp] 224 / 3e-67 AT4G21705 500 / 2e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.006G157400.1 pacid=42769855 polypeptide=Potri.006G157400.1.p locus=Potri.006G157400 ID=Potri.006G157400.1.v4.1 annot-version=v4.1 ATGGCGATGCCACAGTTATATGGGCGGACAAAAAGCGTGACAAAAAGATCAAAGAAGTACCTAGAAGAAGCACTGTATGTGAGGCTGTTCAAAGAAGGCA GCTCAGAGGTTAGTGTGAGACAACAGTTAAATCAGTTCCTCAAGAGCTCCAAGCGTGTCTTCAAATGGGAAGTTGGTGACACTATCAAGAAGCTTCGCAG TCGCAACCTTTATTACCCTGCTGTCAAGCTATCAGAAACTATGTCTAGTAGGGGCATGAATAAAACCGTCAGTGATCAAGCTATCCATCTTGATCTAGTT GCCAAAACTCGAGGCATACCTGCTGCAGAAAATTACTTCATTGATCTTCCTGAAACATCCAAGAACCTTCGAACATATGGAGCTCTTCTCAACTGTTACT GTAAAGAATTGATGACTGAAGAAGCAGAAGCTCTCATTGAAAAGATGAAGGAACTCAATCTTGGTTTGAGCTCCATGTCTTACAACAGCCTTATGACTCT CTACACAAAAGTGGGTCAGCCTGAAAGGATCCCAGCAATTATACAGGAAATGAAGGCTGACAATGTCATGCCAGATTCTTACACATACAATGTCTGGATG AGGGCTCTGGCAGCTGTAAATGATATTTCTGGTGTTGAAAGAGTGATCGAAGAGATGAAGAGGGATGGCCGAGTTGCTGCGAATTGGACAACATATAGCA ACTTAGCCTCGATTTATGTTGATGCTGGATATTTTGATAAGGCAGAAAAGGCACTTAAGGAATTGGAGAAGATAAATGCAAACAAAGATCTTTTTGCTTT CCAGTTCCTGATTACTTTGTATGGTCGAACAGGAAAGTTGATTGAAGTTTATCGAATATGGCGTTCTTTGAGGCTGGCTTTTCCTAAAACTGCAAATATA AGCTATCTAAATATGATCCAGGTGCTGGTTAACTTGAAAGATGTACCTGGTGCAGAGAAGTGCTTCAGGGAATGGGAATCTGGGTGCTCAACATATGATA TCAGGGTTGCAAATGTTGTCATCAGTGCATATGCCAAGGAAGGTTTGGTTGACAAGGCAGAGGAACTCAAGGAAAGGGCCCGCAGGAGAGGAGCCAAACC TAATTCTAAAACCTGGGAAATATTTTGTGATTATTATTTGAAAAATGGGGATGTCAAATTGGGTGTTGATTGTATAGCCAATGCGGTATCTGCTGGTAGA GGGAATGGTCAAAAGTGGGTGCCATCACCTGTGATTGTAGGGTCTTTGATGGCACATTTTGAGCAGCAGAAGGATGTAGATGGTGCAGAAGATCTTATTG AGATTTTGAAGAAGGCTGTAGATGATGTAGCTGTGGAGGTATTTGAGTCATTGATTAGAACTTATGCAGCTGCTGGAAGAAAAAGCCAATTGATGCGTCG CAGATTGAAGATGGAGAATGTGGAAGTGAGTGATGATTGTCAGAAGTTGCTTGAAGCAATATGTGTGGAGTAG
AA sequence Show only first row Show all	>Potri.006G157400.1 pacid=42769855 polypeptide=Potri.006G157400.1.p locus=Potri.006G157400 ID=Potri.006G157400.1.v4.1 annot-version=v4.1 MAMPQLYGRTKSVTKRSKKYLEEALYVRLFKEGSSEVSVRQQLNQFLKSSKRVFKWEVGDTIKKLRSRNLYYPAVKLSETMSSRGMNKTVSDQAIHLDLV AKTRGIPAAENYFIDLPETSKNLRTYGALLNCYCKELMTEEAEALIEKMKELNLGLSSMSYNSLMTLYTKVGQPERIPAIIQEMKADNVMPDSYTYNVWM RALAAVNDISGVERVIEEMKRDGRVAANWTTYSNLASIYVDAGYFDKAEKALKELEKINANKDLFAFQFLITLYGRTGKLIEVYRIWRSLRLAFPKTANI SYLNMIQVLVNLKDVPGAEKCFREWESGCSTYDIRVANVVISAYAKEGLVDKAEELKERARRRGAKPNSKTWEIFCDYYLKNGDVKLGVDCIANAVSAGR GNGQKWVPSPVIVGSLMAHFEQQKDVDGAEDLIEILKKAVDDVAVEVFESLIRTYAAAGRKSQLMRRRLKMENVEVSDDCQKLLEAICVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60770			Tetratricopeptide repeat (TPR)...		Potri.006G157400 [exp]	0	1
AT5G09270			unknown protein		Potri.007G102600 [exp]	2.00	0.8503
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Potri.016G043800 [exp]	3.00	0.7982	EIF3.3
AT3G23620			Ribosomal RNA processing Brix ...		Potri.015G088700 [exp]	3.00	0.8721
AT4G15720			Tetratricopeptide repeat (TPR)...		Potri.008G217000 [exp]	5.47	0.8252
AT4G31810			ATP-dependent caseinolytic (Cl...		Potri.018G018800 [exp]	6.32	0.8309
AT2G34570		MEE21	maternal effect embryo arrest ...		Potri.004G197200 [exp]	9.48	0.7963
AT1G14810			semialdehyde dehydrogenase fam...		Potri.008G135700 [exp]	9.89	0.7860
AT2G44860			Ribosomal protein L24e family ...		Potri.004G187800 [exp]	13.56	0.8004
AT3G03060			P-loop containing nucleoside t...		Potri.001G458200 [exp]	17.86	0.7924
AT4G27585			SPFH/Band 7/PHB domain-contain...		Potri.015G001900 [exp]	21.35	0.7412

Compare expression of checked genes

Potri.006G157400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.