Gene [POPLAR] | FIBexDB

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JGI Phytozome v13

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Popgenie

AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	TAIR10 short description
AT5G28780	195 / 4e-57	PIF1 helicase (.1)
AT3G51700	167 / 2e-46	PIF1 helicase (.1)
AT3G51690	162 / 1e-44	PIF1 helicase (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.003G004501 [exp]	454 / 4e-158	AT5G28780	162 / 5e-48	PIF1 helicase (.1)
Potri.009G002650 [exp]	416 / 3e-131	AT5G28780	154 / 1e-40	PIF1 helicase (.1)
Potri.008G167001 [exp]	364 / 5e-123	AT5G28780	220 / 2e-70	PIF1 helicase (.1)
Potri.009G007400 [exp]	365 / 8e-123	AT5G28780	208 / 2e-65	PIF1 helicase (.1)
Potri.001G185950 [exp]	391 / 3e-121	AT5G28780	213 / 3e-61	PIF1 helicase (.1)
Potri.001G165240 [exp]	369 / 4e-114	AT5G28780	171 / 1e-46	PIF1 helicase (.1)
Potri.012G073100 [exp]	342 / 2e-113	AT5G28780	174 / 8e-52	PIF1 helicase (.1)
Potri.011G042150 [exp]	269 / 5e-78	AT5G28780	174 / 1e-47	PIF1 helicase (.1)
Potri.013G071501 [exp]	266 / 4e-77	AT5G28780	127 / 1e-31	PIF1 helicase (.1)

Flax homologues

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No hit found

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0023 [poplar] [flax]	P-loop_NTPase	PF02689 [poplar] [flax]	Herpes_Helicase	Helicase
CL0023 [poplar] [flax]	P-loop_NTPase	PF05970 [poplar] [flax]	PIF1	PIF1-like helicase
CL0023 [poplar] [flax]		PF14214 [poplar] [flax]	Helitron_like_N	Helitron helicase-like domain at N-terminus

Representative CDS sequence

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>Potri.006G157501.1 pacid=42767514 polypeptide=Potri.006G157501.1.p locus=Potri.006G157501 ID=Potri.006G157501.1.v4.1 annot-version=v4.1

ATGCGAACTTATTATGCTTACCTTATAAATGAAAAGCCTAGGCGCGATAATACCATCATCAAAGGAGAAGATCATCTTGATTATGTTAGAGCTAATAAAA

AAGATTTATGTGTAGAAGTTTATAAAGGTATCCATGAAGTTGTGCTTAAGGGAGATATTGAAGGCTCCTCAACTGGGAAAATCATTGTTCCATCTTCTTT

AACTGGTAGCCCATGTTATATGATCAATAATTACCAATATGCAATGGCTATATGCAGGGCCTATGGAAATCCTGGCCTATTTATTACATTCACATACAAA

CCTGATATCATTACACGTGTTTTTAGATCAAAGGTTATTGATATGGGTTTGCCATACACTCATATGTTGATTTGGTTGCACTCGAATTTTAAATGTCGTA

CAGCTGAAGATGTTGATTCCATTGTTTCAACTAAAATTCCTGACAAATTTACAGATCTAATATGCTATGAAATTGTTTCGAGATTCATGATACATGGTCC

ATGTGGTCTTACAAATCCAAAATCTCAATGTATGAATGAGGGATATCTTTTTAAGTATGTAACCAAAGGCTTCGACAGATGTAGAGTTGTTGTTGAAAAA

GATCGTACTGATGAGATCCATGCATATATGAATTGTTGTTTTAAATGCCCATATGAAGCGCGCTCAATGTACGATGATATTATCACCCGTTTCAAGTCCA

GCTTTGCCATGCCTAATCTTAAATTATTCGATGATGAGCTTAAAAACTATGTTTTATATGAGCTTGAGCTTCTATTCAATGTTGCTGCCTCATCTCTTGA

GAAACACAAGCTTCCAATGCATGATGGGCGTTTATTATCAGAAATAAAGAACAAACTTTTGAGAGAAGAACTTAACTATGATATTGCAGATCTTATATTT

CTCAATCTTACAGAGAACATGAGGCTATCATGCAATGAACTTTTAGATGATCAAAAGAAAGAAGTTTCTATTTTTTCCAGCTGGATTCTTGCAATTGGTG

ATGGAACTTATCAGGATGTTTTGTTCCCTGATGATTATGATGTATCCATGATTAAAATACCACAAGATCTTCTCTTTGAAACTAGATCCGACCCAATATT

AGCAATTGTCTCTGCTGTGTATCCCTCTATTCGTGACATCAATATTGATCCATGTTATTTTAGAGAGAGAGTAATTGTAACTCCAAGAAATATTATAGTT

TCTGAAATCAACGATTGTATCTTTAACATGTTACCGGGAATGAAGCGGATTTACCTAAGTACTGATATTATTTGCAAAGCATCAAGTGATGGTGACAATG

TAGATATTTTGTATACTGTTGAATTTATCAATCAACTTGAGTTCAATGGAGTGCCATCCCACACAATTTTCTTGAGAATTGGCATACCAATAATGCTTTT

ATGCAATCTTAATTTGTCAGCTGATTTATGTAATGAAACAAGACTTATTGTTACACAGCTTGCCGAGAGGGTCATAAAAGCTCAAATAATAACAAGTTCT

TTTATTGGTAATCATGTTTTTATTCCCAGGATTGTTTTTCCAATAAATGATACAAAATGTCCATTCACAATTAAACGAAGACAATTTCCTATAAGATTAT

GTTATGCTATGACAATAAATAAAAGTCAAGGACAATCGTTGAAGGTTGTTAGAGTTTTTCTTAAGGAACAAGTTTTCACTCATGGACAATTGTACATTGC

TCTTTCACGTGTTACCTCAAAACAAGAACTTAAAATTATCACATGCGATGCTGAAGGAAATCATTCAATCTATGTGAAAAACATTGTGTACAAGGATGCT

CTTTGCTCTTTATCAATATCATAA

AA sequence

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>Potri.006G157501.1 pacid=42767514 polypeptide=Potri.006G157501.1.p locus=Potri.006G157501 ID=Potri.006G157501.1.v4.1 annot-version=v4.1

MRTYYAYLINEKPRRDNTIIKGEDHLDYVRANKKDLCVEVYKGIHEVVLKGDIEGSSTGKIIVPSSLTGSPCYMINNYQYAMAICRAYGNPGLFITFTYK

PDIITRVFRSKVIDMGLPYTHMLIWLHSNFKCRTAEDVDSIVSTKIPDKFTDLICYEIVSRFMIHGPCGLTNPKSQCMNEGYLFKYVTKGFDRCRVVVEK

DRTDEIHAYMNCCFKCPYEARSMYDDIITRFKSSFAMPNLKLFDDELKNYVLYELELLFNVAASSLEKHKLPMHDGRLLSEIKNKLLREELNYDIADLIF

LNLTENMRLSCNELLDDQKKEVSIFSSWILAIGDGTYQDVLFPDDYDVSMIKIPQDLLFETRSDPILAIVSAVYPSIRDINIDPCYFRERVIVTPRNIIV

SEINDCIFNMLPGMKRIYLSTDIICKASSDGDNVDILYTVEFINQLEFNGVPSHTIFLRIGIPIMLLCNLNLSADLCNETRLIVTQLAERVIKAQIITSS

FIGNHVFIPRIVFPINDTKCPFTIKRRQFPIRLCYAMTINKSQGQSLKVVRVFLKEQVFTHGQLYIALSRVTSKQELKIITCDAEGNHSIYVKNIVYKDA

LCSLSIS

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Only top 10 genes are shown Show all Download tab-delimited text

Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description	Locus	MR	r
AT5G28780			PIF1 helicase (.1)	Potri.006G157501 [exp]	0	1
				Potri.001G276804 [exp]	4.24	1.0000
				Potri.001G330250 [exp]	6.00	1.0000
				Potri.001G466250 [exp]	8.48	1.0000
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...	Potri.004G160200 [exp]	10.39	1.0000
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...	Potri.004G115500 [exp]	10.95	1.0000
				Potri.005G134725 [exp]	11.22	1.0000
				Potri.005G145702 [exp]	12.00	1.0000
				Potri.006G229001 [exp]	13.41	1.0000
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)	Potri.007G114001 [exp]	14.07	1.0000
				Potri.008G169851 [exp]	14.69	1.0000

Potri.006G157501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.006G157501 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.006G157501 coexpression network