Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24515 290 / 1e-92 UBC37 ubiquitin-conjugating enzyme 37 (.1) AT3G08690 122 / 2e-32 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT5G56150 122 / 2e-32 UBC30 ubiquitin-conjugating enzyme 30 (.1.2) AT1G64230 119 / 2e-31 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT5G41700 119 / 3e-31 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT5G53300 118 / 3e-31 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT2G16740 117 / 6e-31 UBC29 ubiquitin-conjugating enzyme 29 (.1) AT4G27960 117 / 1e-30 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT1G16890 111 / 1e-28 UBC36 ,UBC13B UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) AT3G08700 110 / 3e-28 UBC12 ubiquitin-conjugating enzyme 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G083800 [exp] 127 / 3e-34 AT5G56150 280 / 1e-98 ubiquitin-conjugating enzyme 30 (.1.2) Potri.001G471200 [exp] 122 / 2e-32 AT1G64230 292 / 2e-103 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.019G131400 [exp] 120 / 5e-32 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.003G136200 [exp] 120 / 8e-32 AT1G64230 304 / 4e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.006G110200 [exp] 120 / 8e-32 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.001G094900 [exp] 120 / 1e-31 AT1G64230 302 / 2e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.015G023300 [exp] 119 / 1e-31 AT5G53300 302 / 1e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Potri.012G033000 [exp] 119 / 1e-31 AT5G53300 302 / 1e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Potri.011G168200 [exp] 119 / 2e-31 AT1G64230 295 / 1e-104 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028700 [exp] 122 / 1e-32 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10009422 [exp] 122 / 1e-32 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10022726 [exp] 119 / 3e-31 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10014187 [exp] 119 / 3e-31 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10014942 [exp] 119 / 3e-31 AT1G64230 301 / 3e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10038827 [exp] 119 / 3e-31 AT1G64230 301 / 3e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10039323 [exp] 119 / 3e-31 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10027570 [exp] 119 / 3e-31 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10032352 [exp] 118 / 4e-31 AT5G53300 302 / 2e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Lus10033937 [exp] 117 / 7e-31 AT5G53300 300 / 2e-106 ubiquitin-conjugating enzyme 10 (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G157600.2 pacid=42768659 polypeptide=Potri.006G157600.2.p locus=Potri.006G157600 ID=Potri.006G157600.2.v4.1 annot-version=v4.1 ATGGCACAAGCCGCGAGGCTCAATCTTCGAATGCAAAAGGAGCTCAAGCTCCTCCTGACCGACCCTCCACCCGGCGCCTCCTTTCCTTTTCTCTCCACCG CCTCCGATTTCTCCTCTTTGTCAACTATCGACGCCCAGATTGAAGGGCCCGAAGGGAGTGTATATGCTAAGGGGATTTTCAGCATTAAGATTCAAATACC CGATAGGTACCCATTTCAGCCTCCAAGTGTGACCTTTGCCACGCCAATCTATCACCCTAATATCGATAACGGAGGTCGGATTTGCCTTGACATTCTTAAT CTTCCCCCGAAGGGTGCATGGCAACCATCATTAAACATTTCAACAGTGCTAACAAGCATAGGATTGTTGCTGTGTGAGCCAAATCCTGATGATGGCCTAA TGTGTGAAGCTAGCAGAGAATACAAATATAACAGGCTGGTGTTTGACCAAAGAGCTCAAGCCATGACTGAGAAATATGCTAAGCCTGGAGCCAATATCGG TAGCTGCAGTACTCAATGCATTCAAAGTGACACAAATTCAAGCCCAATGGTGGAAATTAAAGGACCAGACAAGGAGTCGACTAATCAAAATAAGGATTTC GTTTCTAATCATAAGAAACCTAGTGGGATTGGTGGAAAGCTGTCTCTGGAGTTTGCCACCTCCGCTTGTAACAAGGGAAGTGATGGAGATGTGAATAACA AGCAAAATCATGACCTCCTGTTTGACTTCAGAAATCACACAGAAACAAAAGGGGAGGGGGGAGAGTCGATTGTTATGCCTGAAGAGTACAATGTGAAATA TGAGAAGCCAAGTGGCATTGGGAAGAAGTTGTCTCTTGAATCCTCTGTTAGATTCCCTGAACATAACACACAGAATATAAACCCAAAGCAATATCAATCC TTCTGTAACCCACAAACTGCTCCTATGACTTCTTTGGATTTGCTAGTGCTGCACGTTGGCAACTGTAATGAGCAACGACTCCATAAGCAGCATGATAAGA TATCAACGTTTGACAGCGAAAGCACAAGCTCAGACAATCTTTGTCAGGTTAGCCTTAAGATGCTGTCTGGAGCTTTGGATGCATACCAAACAAATGATGG CATAAATGAGGAAATCCTTGTAACCCCTGAACTATTGCCTTCTCAGTCCCATTCTAATTCAACTCCAGAGACCTTGCTGGTGGCCTCATCCTTCAAACAT AATGAACTGCCTTGTAGGGATTCTTTTATTGGAATTGATAATACCACCATCAATGCAAGATGTAATAAGCCACCGCCGGTTAGTAAGAAGCTTTCTTTGG GATTTAAAACCTCATCACAGGGACAAGAAAAGGATGACGAAGAGAATATTGTGCCAATTCACGAGCTTCCATTTTCAAATCCTCAAACTGCGAAGAAGAT TGGGATTAGCCAGAAACTATCTTTGGGTCCTCTCACTCAATTGCAGGGGAGCAATGAGGATAATAGCAGGTTGCTTTTGCACTCGCAGAACCTCTTTCCA GATACTCTCCAGAAGCAGCAGTCTATCCAACATCAAATTAGGAAAATTGATAAGGGGATTGAGTCCAGTGGGGGAGACTCACCAGTTGCCGAATCAGTAA TTGTGCTGGATAGTGAAGATAGTGAAGAGGACATCAATGGATCAGCAAGGTTTGAATTGTCATTAGTGAGAAAGTGTATGAAGAAGAGGAAAAGTTGTGC TTGA
AA sequence Show only first row Show all	>Potri.006G157600.2 pacid=42768659 polypeptide=Potri.006G157600.2.p locus=Potri.006G157600 ID=Potri.006G157600.2.v4.1 annot-version=v4.1 MAQAARLNLRMQKELKLLLTDPPPGASFPFLSTASDFSSLSTIDAQIEGPEGSVYAKGIFSIKIQIPDRYPFQPPSVTFATPIYHPNIDNGGRICLDILN LPPKGAWQPSLNISTVLTSIGLLLCEPNPDDGLMCEASREYKYNRLVFDQRAQAMTEKYAKPGANIGSCSTQCIQSDTNSSPMVEIKGPDKESTNQNKDF VSNHKKPSGIGGKLSLEFATSACNKGSDGDVNNKQNHDLLFDFRNHTETKGEGGESIVMPEEYNVKYEKPSGIGKKLSLESSVRFPEHNTQNINPKQYQS FCNPQTAPMTSLDLLVLHVGNCNEQRLHKQHDKISTFDSESTSSDNLCQVSLKMLSGALDAYQTNDGINEEILVTPELLPSQSHSNSTPETLLVASSFKH NELPCRDSFIGIDNTTINARCNKPPPVSKKLSLGFKTSSQGQEKDDEENIVPIHELPFSNPQTAKKIGISQKLSLGPLTQLQGSNEDNSRLLLHSQNLFP DTLQKQQSIQHQIRKIDKGIESSGGDSPVAESVIVLDSEDSEEDINGSARFELSLVRKCMKKRKSCA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24515		UBC37	ubiquitin-conjugating enzyme 3...		Potri.006G157600 [exp]	0	1
AT3G17100	bHLH	bHLH147, AIF3	sequence-specific DNA binding ...		Potri.010G147400 [exp]	6.48	0.7774
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Potri.005G074700 [exp]	11.61	0.7448	POR.1,TFCFC
AT4G32160			Phox (PX) domain-containing pr...		Potri.018G026000 [exp]	12.16	0.7781
AT2G22640		ATBRK1, BRK1, H...	BRICK1, putative (.1)		Potri.014G010000 [exp]	15.68	0.7133
AT2G39050		ArathEULS3	Euonymus lectin S3, hydroxypro...		Potri.019G031500 [exp]	19.36	0.7579
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Potri.010G255600 [exp]	28.10	0.7137
AT1G32770	NAC	NST3, ANAC012, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.001G448400 [exp]	50.37	0.7686
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Potri.009G160200 [exp]	56.12	0.7491
AT1G11480			eukaryotic translation initiat...		Potri.007G119200 [exp]	62.76	0.6868
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Potri.007G093800 [exp]	63.27	0.7147

Compare expression of checked genes

Potri.006G157600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.