Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19460 426 / 3e-149 ATNUDT20 nudix hydrolase homolog 20 (.1) AT5G19470 416 / 1e-145 ATNUDT24 nudix hydrolase homolog 24 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G157800 [exp] 703 / 0 AT5G19460 419 / 3e-146 nudix hydrolase homolog 20 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017736 [exp] 451 / 2e-158 AT5G19460 421 / 2e-146 nudix hydrolase homolog 20 (.1) Lus10033086 [exp] 414 / 4e-144 AT5G19460 392 / 2e-135 nudix hydrolase homolog 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [poplar] [flax] NUDIX PF15916 [poplar] [flax] DUF4743 Domain of unknown function (DUF4743)
Representative CDS sequence Show only first row Show all	>Potri.006G157700.1 pacid=42767035 polypeptide=Potri.006G157700.1.p locus=Potri.006G157700 ID=Potri.006G157700.1.v4.1 annot-version=v4.1 ATGATGGTCATGATTCCTCTCGCCCTCCCTAACAAAATCGGCTTCTCGTTACCTTTTCTCTATAAACCAATCACAACAAGAGGAGGAGGAGGAGGAAGCA GTTGTTCTGCTTTTACTTGTCGCTCTGTTTCATCACTTACCAGCTTCACTTGGGACGACGTCGTTCAAGCCTCTCAACCTGACTATGCCCCAAATGATTC TTCAGATCTCTCTGGCTTCTTCGAAAAGATCAAATACTGCAATCGCGGCTCCTCCGAGATAAAATCTGAATTTATTCCATTGGTGATAGAGGATCAAATA GTTGGTTACATACATAACGGTTTTTTTTATAATTATTTGAGGAGGTTTAAGGACGTGTTTGTTTTTGTGCCAAGTGATTCTCGTTTTGGCACCAATGTGA CTTTAAATAAAACACTAAGCACACCAGAGGAAAGAACCAGAGTTGTTGGAAAAGTAATCAAATGCTTGGCAGAAGAAGAAAAGGAACTGATTCCAGGAAT ACGAAATGAGTTGTACCCAGTCGCACCTTCGTTTGGATCGCCCCCCTATTTTTCCGTTGAACGTGCTGCTGCTCCTTATTTTGGAATTAAGGCATATGGA GTTCAAATGAATGGTTTTTTGAAAAGAGATGGGGAGAAATTCTTATGGATAGGAAAGAGAAGTCCAATGAAACAAACTTTTCCTGGGATGCTTGATCATC TTGTTGCTGGTGGACTGCCTCATGGGATGTCTTGTGTTGCAAATCTTATAAAGGAATGTGAAGAGGAAGCAGGGATTCCTCTATCCCTTTCTAATCAAGC CATGTCAGTTGGTGCTGTTTCTTATGTGGATGTTGATGGGTATAGATACGAGAGGGGTGTTCTATTTTGTTATGATTTAGAACTCCCTGGTGGTTTTATT CCTAAGAATCAAGATGGGGAAGTGGAGAGTTTCAAGTTGATCCCCGTGGAAAATGTTGCAAATGTAATACGGAGGACCCATTTTTTCAAGCCTAATTGCT CTCTTGTTATCATTGATTTTCTGTTTCGACACGGGTATATTGGTCCTGAATGCTTGGGATACTTGGATCTATTACAAAGTTTGAGAAGTGGAGATACTTC CTAA
AA sequence Show only first row Show all	>Potri.006G157700.1 pacid=42767035 polypeptide=Potri.006G157700.1.p locus=Potri.006G157700 ID=Potri.006G157700.1.v4.1 annot-version=v4.1 MMVMIPLALPNKIGFSLPFLYKPITTRGGGGGSSCSAFTCRSVSSLTSFTWDDVVQASQPDYAPNDSSDLSGFFEKIKYCNRGSSEIKSEFIPLVIEDQI VGYIHNGFFYNYLRRFKDVFVFVPSDSRFGTNVTLNKTLSTPEERTRVVGKVIKCLAEEEKELIPGIRNELYPVAPSFGSPPYFSVERAAAPYFGIKAYG VQMNGFLKRDGEKFLWIGKRSPMKQTFPGMLDHLVAGGLPHGMSCVANLIKECEEEAGIPLSLSNQAMSVGAVSYVDVDGYRYERGVLFCYDLELPGGFI PKNQDGEVESFKLIPVENVANVIRRTHFFKPNCSLVIIDFLFRHGYIGPECLGYLDLLQSLRSGDTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19460		ATNUDT20	nudix hydrolase homolog 20 (.1...		Potri.006G157700 [exp]	0	1
AT4G34240		ALDH3I1	aldehyde dehydrogenase 3I1 (.1...		Potri.001G412900 [exp]	6.70	0.9416
AT5G08650			Small GTP-binding protein (.1)		Potri.001G305300 [exp]	7.07	0.9528
AT1G32070		ATNSI	nuclear shuttle interacting (....		Potri.016G140000 [exp]	8.60	0.9156
AT1G48520		GATB	GLU-ADT subunit B (.1.2.3)		Potri.008G172700 [exp]	10.48	0.9404	GATB.1
AT5G53170		FTSH11	FTSH protease 11 (.1)		Potri.012G000700 [exp]	17.83	0.9401
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Potri.014G112266 [exp]	18.00	0.9353
AT5G27560			Domain of unknown function (DU...		Potri.013G020800 [exp]	21.02	0.9278
AT5G19500			Tryptophan/tyrosine permease (...		Potri.001G224950 [exp]	21.16	0.9292
AT3G05350			Metallopeptidase M24 family pr...		Potri.013G021400 [exp]	21.72	0.9407
AT4G12830			alpha/beta-Hydrolases superfam...		Potri.014G175700 [exp]	23.06	0.9392

Compare expression of checked genes

Potri.006G157700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.