Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19460 419 / 3e-146 ATNUDT20 nudix hydrolase homolog 20 (.1) AT5G19470 408 / 2e-142 ATNUDT24 nudix hydrolase homolog 24 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G157700 [exp] 703 / 0 AT5G19460 426 / 3e-149 nudix hydrolase homolog 20 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017736 [exp] 444 / 8e-156 AT5G19460 421 / 2e-146 nudix hydrolase homolog 20 (.1) Lus10033086 [exp] 406 / 5e-141 AT5G19460 392 / 2e-135 nudix hydrolase homolog 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [poplar] [flax] NUDIX PF15916 [poplar] [flax] DUF4743 Domain of unknown function (DUF4743)
Representative CDS sequence Show only first row Show all	>Potri.006G157800.1 pacid=42766939 polypeptide=Potri.006G157800.1.p locus=Potri.006G157800 ID=Potri.006G157800.1.v4.1 annot-version=v4.1 ATGATGATCATAATGCCTCTCGCCCTCCCTAACAAAATCGGATTCTCGTCACCTTTTCTCTATAAACCAAGCACAACAAGGGGAGGGGGAGGAGGAGGAG GAGGAAGCAGTTGTTTTGCTTTTACTTGTCGCTCTGTTTCATCACTTACCAGCTTCACTTGGGACGGCGTCGTTCAAGCCTCTCAAGCTGACTATGCCCC AAATGATTCTTCAGATCTCTCTGGCTTCTTCGAAAAGATCAAATACTGCAATCGCGGCTCCTCCGAGATAAAATCTGAATTTATTCCATTGGTGATAGAG GATCAAATAGTTGGTTACATACATAACGGTTTTTTTTATAATTATTTGAGGAGGTTTAAGGACGTGTTTGTTTTTGTGCCAAGTGATTCTCGTTTTGGCA CCAATGTGACTTTAAATAAAACACTAAGCACACCAGAGGAAAGAACCAGAGTTGTTGGAAAAGTAATCGAATGCTTGGCAGAAGAAGAAAAGGAACTGAT TCCAGGAATACGAAATGAGTTGTACCCAGTCGCACCTTCGTTTGGATCGCCCCCCTATTTTTCCATTGAACGTGCTGCTGCTACTTATTTTGGAATTAAG GCATATGGAGTTCATATGAATGGTTTTGTGAAAAGCGATGGGGAGAAGTTCTTATGGATAGGAAAGAGAAGTCCAATGAAACAAACTTTTCCTGGGATGC TTAATCATCTTGTTGCTGGTGGACTGCCTCATGGGATGTCTTGTGTTGCAAATCTTATAAAGGAATGTGAAGAGGAAGCAGGGATTCCTCTATCCCTTTC TAATCAAGCCATGTCAGTTGGTGCTGTTTCTTATGTGGATGTTGATGGGTATAGATACGAGAGGGGTGTTCTATTTTGTTATGATTTAGAACTCCCTGGT GGTTTTATTCCTAAGAATCAAGATGGGGAAGTGGAGAGTTTCAAGTTGATCCCCTTGGAAAATGTTGCAAATGTAATACGGAGGACCCATTTTTTCAAGC CTAATTGCTCTCTTGTTATCATGGATTTTCTGTTTCGACACGGGTACATTGGTCCTGAATGCTTGGGATACTTGGATCTATTACAAAGTTTGAGAAGTGG AGATACTTCCTAA
AA sequence Show only first row Show all	>Potri.006G157800.1 pacid=42766939 polypeptide=Potri.006G157800.1.p locus=Potri.006G157800 ID=Potri.006G157800.1.v4.1 annot-version=v4.1 MMIIMPLALPNKIGFSSPFLYKPSTTRGGGGGGGGSSCFAFTCRSVSSLTSFTWDGVVQASQADYAPNDSSDLSGFFEKIKYCNRGSSEIKSEFIPLVIE DQIVGYIHNGFFYNYLRRFKDVFVFVPSDSRFGTNVTLNKTLSTPEERTRVVGKVIECLAEEEKELIPGIRNELYPVAPSFGSPPYFSIERAAATYFGIK AYGVHMNGFVKSDGEKFLWIGKRSPMKQTFPGMLNHLVAGGLPHGMSCVANLIKECEEEAGIPLSLSNQAMSVGAVSYVDVDGYRYERGVLFCYDLELPG GFIPKNQDGEVESFKLIPLENVANVIRRTHFFKPNCSLVIMDFLFRHGYIGPECLGYLDLLQSLRSGDTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19460		ATNUDT20	nudix hydrolase homolog 20 (.1...		Potri.006G157800 [exp]	0	1
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Potri.005G053200 [exp]	2.44	0.7642	Pt-BZO2.3
AT2G02410			unknown protein		Potri.003G046600 [exp]	6.48	0.7484
AT5G57000			unknown protein		Potri.006G148000 [exp]	7.21	0.6824
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Potri.013G104700 [exp]	8.48	0.7010
AT5G43822			Pentatricopeptide repeat (PPR)...		Potri.005G253200 [exp]	9.89	0.7188
AT4G36960			RNA-binding (RRM/RBD/RNP motif...		Potri.005G138600 [exp]	12.12	0.6682
AT3G05920			Heavy metal transport/detoxifi...		Potri.002G032800 [exp]	13.41	0.6807
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Potri.008G188600 [exp]	15.42	0.6733
AT2G45150		CDS4	cytidinediphosphate diacylglyc...		Potri.014G060100 [exp]	21.44	0.6985
AT1G63900		DAL1	DIAP1-like protein 1, E3 Ubiqu...		Potri.014G138000 [exp]	33.46	0.6129	Pt-ZCF61.1

Compare expression of checked genes

Potri.006G157800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.