Plant FIBer expression Database

Potri.006G158100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G20120 409 / 5e-146 COV1 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1)
AT2G20130 392 / 2e-139 LCV1 like COV 1 (.1)
AT2G18460 372 / 5e-131 LCV3 like COV 3 (.1)
AT1G43130 331 / 3e-115 LCV2 like COV 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G082100
[exp]
466 / 2e-168 AT2G20120 412 / 2e-147 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1)
Potri.005G124100
[exp]
353 / 1e-123 AT2G18460 365 / 2e-128 like COV 3 (.1)
Potri.002G065800
[exp]
331 / 4e-115 AT1G43130 407 / 2e-145 like COV 2 (.1)
Potri.005G148000
[exp]
319 / 1e-110 AT1G43130 319 / 2e-110 like COV 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011099
[exp]
427 / 1e-152 AT2G20120 392 / 4e-139 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1)
Lus10028563
[exp]
347 / 2e-121 AT1G43130 405 / 1e-144 like COV 2 (.1)
Lus10014314
[exp]
348 / 1e-120 AT2G18460 379 / 3e-132 like COV 3 (.1)
Lus10026023
[exp]
348 / 2e-120 AT2G18460 378 / 5e-132 like COV 3 (.1)
Lus10043220
[exp]
335 / 6e-118 AT2G20120 324 / 9e-114 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1)
Lus10028564
[exp]
334 / 3e-116 AT1G43130 405 / 2e-144 like COV 2 (.1)
Lus10018869
[exp]
333 / 5e-116 AT1G43130 408 / 1e-145 like COV 2 (.1)
Lus10018868
[exp]
330 / 6e-114 AT1G43130 387 / 1e-136 like COV 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04367 DUF502 Protein of unknown function (DUF502)
Representative CDS sequence
>Potri.006G158100.1 pacid=42767097 polypeptide=Potri.006G158100.1.p locus=Potri.006G158100 ID=Potri.006G158100.1.v4.1 annot-version=v4.1
ATGGGAGATGAGAAATCGGCGATCGTGATGGCGAGTAGAGATCGAGAGCTTCTCATACCGGTCGCTGACTCCCCCGATGTTGAAGTCGCTTCCAAACCCT
CTTCTTCTTCTTCCTCATCATCGCATCACTCAGGACGCGAGACGTTTTACAAAGTTGTTAGGAGCTGGGCTTCAAAAAAGTTCATGACAGGATGTGTCAT
ACTGTTTCCCATTGCAATCACTTTCTACATAACATGGTGGTTTGTTCACTTTGTGGATGGATTCTTCTCTCCAATCTATGCCCATCTTGGAATTGATATC
TTTGGTCTTGGATTTATAACCTCCATAACATTCATTTTCTTGGTTGGGGTATTCATGTCATCTTGGTTGGGAGCTTCTGTCCTGAGCCTTGGGGAGTGGT
TTATCAAACGGATGCCATTTGTTCGTCATATTTATAATGCCTCCAAGCAAATTAGTGCTGCCATATCACCAGACCAAAATACTCAAGCTTTCAAGGAAGT
GGCCATTATAAGACATCCACGTATCGGTGAATATGCTTTTGGGTTCATTACTTCATCTGTCATCCTCCAGAACTACTCTGGAGAAGAGGAGTTATGCTGT
GTGTATGTTCCCACGAATCATCTGTACATTGGAGATATATTCCTAGTCAATACCAAGGATGTTATCAGACCCAATCTTTCAGTCCGAGAAGGAATTGAAA
TTGTGGTGTCTGGGGGGATGTCAATGCCCCAGATCCTGTCAACACTTGATTCACGCATTTCAGTGGATAGAAGTAGATCTGAAAGAAGCTGA
AA sequence
>Potri.006G158100.1 pacid=42767097 polypeptide=Potri.006G158100.1.p locus=Potri.006G158100 ID=Potri.006G158100.1.v4.1 annot-version=v4.1
MGDEKSAIVMASRDRELLIPVADSPDVEVASKPSSSSSSSSHHSGRETFYKVVRSWASKKFMTGCVILFPIAITFYITWWFVHFVDGFFSPIYAHLGIDI
FGLGFITSITFIFLVGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPDQNTQAFKEVAIIRHPRIGEYAFGFITSSVILQNYSGEEELCC
VYVPTNHLYIGDIFLVNTKDVIRPNLSVREGIEIVVSGGMSMPQILSTLDSRISVDRSRSERS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G20120 COV1 CONTINUOUS VASCULAR RING, Prot... Potri.006G158100
[exp]
0 1
AT4G10100 CNX7, SIR5 "co-factor for nitrate, reduct... Potri.019G070801
[exp]
3.46 0.7513
AT1G61780 postsynaptic protein-related (... Potri.004G021200
[exp]
5.47 0.7657
AT5G18250 unknown protein Potri.001G023000
[exp]
18.13 0.7061
AT5G40670 PQ-loop repeat family protein ... Potri.017G070300
[exp]
20.49 0.6464
AT1G22040 Galactose oxidase/kelch repeat... Potri.005G170000
[exp]
20.97 0.6134
Potri.002G120500
[exp]
21.35 0.7253
AT1G11020 RING/FYVE/PHD zinc finger supe... Potri.018G073400
[exp]
22.18 0.6159
AT2G32070 Polynucleotidyl transferase, r... Potri.018G020900
[exp]
29.73 0.6239
AT5G58740 HSP20-like chaperones superfam... Potri.001G251204
[exp]
30.62 0.5916
AT5G18420 unknown protein Potri.017G122600
[exp]
32.24 0.6607

Potri.006G158100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.