Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24440 522 / 3e-178 VRN5, VIL1 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) AT5G57380 221 / 9e-63 VIN3 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) AT4G30200 219 / 1e-61 VEL1, VIL2 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) AT2G18880 176 / 2e-47 VIL3, VEL2 VIN3-like 3, vernalization5/VIN3-like 2, vernalization5/VIN3-like (.1) AT2G18870 85 / 3e-18 VIL4, VEL3 VIN3-like 4, vernalization5/VIN3-like 3, vernalization5/VIN3-like (.1) AT1G14740 48 / 2e-05 Protein of unknown function (DUF1423) (.1) AT3G63500 46 / 8e-05 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G076500 [exp] 1313 / 0 AT3G24440 531 / 0.0 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Potri.018G091500 [exp] 372 / 6e-118 AT4G30200 612 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.006G167800 [exp] 288 / 2e-86 AT4G30200 627 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.002G111600 [exp] 227 / 9e-66 AT2G18880 262 / 7e-81 VIN3-like 3, vernalization5/VIN3-like 2, vernalization5/VIN3-like (.1) Potri.010G102600 [exp] 47 / 5e-05 AT1G14740 773 / 0.0 Protein of unknown function (DUF1423) (.1) Potri.008G138100 [exp] 45 / 0.0001 AT1G14740 729 / 0.0 Protein of unknown function (DUF1423) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019394 [exp] 786 / 0 AT3G24440 499 / 8e-171 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10043251 [exp] 600 / 0 AT3G24440 432 / 8e-145 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10019393 [exp] 556 / 0 AT3G24440 381 / 6e-126 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10043250 [exp] 260 / 5e-80 AT3G24440 226 / 3e-68 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10038260 [exp] 213 / 5e-59 AT4G30200 561 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Lus10042869 [exp] 195 / 2e-54 AT5G57380 237 / 5e-71 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10028170 [exp] 194 / 2e-54 AT5G57380 239 / 8e-72 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10025841 [exp] 163 / 4e-42 AT4G30200 484 / 8e-163 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Lus10019718 [exp] 50 / 1e-05 AT3G63500 665 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10016399 [exp] 48 / 4e-05 AT3G63500 717 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF00041 [poplar] [flax] fn3 Fibronectin type III domain
Representative CDS sequence Show only first row Show all	>Potri.006G158676.1 pacid=42770364 polypeptide=Potri.006G158676.1.p locus=Potri.006G158676 ID=Potri.006G158676.1.v4.1 annot-version=v4.1 ATGGACTTAGAGGATACATTCCTTGCTAAAGTTTCTGGTGTTCAAAGCCTTTCTTCCAGTGTGCAAAGCACCCCGGAAAAAAATGGCAATTCAGATGATG CTTCTAGAAGTCCAGAACTCCTTCAAGAGTTTCTAAAATCTGGTCCCAAAAAGGAACTTCTTCGAACTTGCTTTGACAAAGAAAAGAAACAAACAGCTTC ATCAAAAAGCAAAATGACAGAACTTCTGAAGACAGGTAACAAAACTTATAAGAAGCAGGAATCCAAAAAAGCTGCTTCTAGTCCCAATAATCAACCTTCT TTTAAGAAGCAACAAAGAAAGGGGGAAAACCCAATGCGACTTGTACCTTCTTCTGAGCAGTCATCTGAGTTTGGATGTTCAAACTCATGGATATGTAAAA ATTCAGCTTGCAGAGCTGTTCTATCCATTGACGACACATTTTGCAAGAGGTGCTCTTGCTGTATTTGTCATTTATTTGATGACAATAAAGACCCTAGTCT CTGGTTGGTTTGCACATCTGACAATGGTCAGGGGGACTCCTGTGAGCTATCTTGTCATATTGAGTGTGCCCTTCAACGTGAAAAGGTCGGGGTTGTTGAC CTTGGCCAATTGATGCAGTTAGATGGTAGTTATTGTTGTGCTTCTTGTGGTAAAGTTTCAGGGATTCTCGGAAGTTGGAAGAAGCATCTAATTATAGCAA AGGATGCTCGTAGACTTGATGTGCTCTGTTATAGGATATACTTGAGCTACAGACTACTTGATGGGACTTCAAGGTTTAAAGAACTGCATGGAATTATCAA GGATGCCAAGGCTAAAATAGAAACAGAAGTAGGTCCAGTAGATGGTGTTTCTGCCAAGATGGCACGTGGCATCGTCAGCAGACTCTCTGTCGCTGGTGAT GTACAGAAACTTTGCTCTCTTGCAATTGAAAAGGCAGAAGAATGGCTCACTACCGTTTCTAGTGCAAACCCAAATTGCAGAGAGGATTCCCTTCCTGCTG CTTGCAGATTCTTATTTGAAGAAGTGAAATCCTCATCTGTTGTAATTATTTTAATTGAATTGTCTACTGCATTGTCTGATGATATTAAGGGCTACAAGCT CTGGTATTGCAAGAGTAGAGAAGAGACACATGCAAAAGAACCTATTTGCATGTTTCCAAGATCTCAGAGAAGGATTTTGATTTCCAATCTACAGCCCTGC ACAGAGTATACTTTTCGGATTGTTTCTTATACAGAGGCTGGTGACTTGGGTCACTCCGAGGCTAAGTGTTTTACCAAGAGCATAGAGATAATTCAAAAAA ATCCTAATCCTTCAGTTGCAAGGAATGGTAAGAAAGAGAATACTGTCACCGGAGGATATACTTCTAGTTACAATAGGGATTCCAAAACTACAACTGCTGT TAATTCTTCTGGATTCATGGTTCGTGACCTTGGAAAGATTCTTCATCTGGCTGGGGCTCAAAAGCAAGGCTGCTTTGAAGGTTTCTGCAGTGCTGATACC GAAAAATGCTGTGGAGGCAGCAAAGTGGTCAAGCCTCAAACTTCAGAAGATCCAGTGCCATCTATTTCACATGGGCTAGACTTAAATGTTGTTTCAGTGC CTGATTTGAATGAAGAGCTGACTCCATTTGAGTCCTCCCGTGATGAGGATAATGGGTGCACTTTGGAGCAGGCAATTGAGGCAGATGATGATGCTGCTTC CCATGATGTAGAGAAAAATGATTTAGCAAGATCTCATGGTACTGGTGACTCCCAGACCTGGATGCATGGGCCAAGCAGGGAAGTGCCCACTGTTGATTCC CGGTCAGAGTTGTGCAGGAAAAGGGCTGCACACACGAATGAAGACGTGCATGACTGTGATAGCACTTTGATAAATGAATCACCATTCCGTGTGTCCAGTG GTTCAGGTTACCTGGATGAGAACTTTGAGTACTGTGTGAAGGCGATCCGTTGGTTGGAATGTGAGGGTTACATTAACCAGGAATTTAGGTTGAAATTGCT GACATGGTTTAGTTTGAGATCAACGGAACAAGAACGTAGAGTGGTTAACACCTTTATCCAAACTCTGATTGATGATCCTAGTAGCCTGGGAGGACAGTTG GTTGACTCCTTTTCAGATATCATATCCAGCAAGAGGCCACGGAATGGATTCTGTGGCAAGCTGTGGCATTAA
AA sequence Show only first row Show all	>Potri.006G158676.1 pacid=42770364 polypeptide=Potri.006G158676.1.p locus=Potri.006G158676 ID=Potri.006G158676.1.v4.1 annot-version=v4.1 MDLEDTFLAKVSGVQSLSSSVQSTPEKNGNSDDASRSPELLQEFLKSGPKKELLRTCFDKEKKQTASSKSKMTELLKTGNKTYKKQESKKAASSPNNQPS FKKQQRKGENPMRLVPSSEQSSEFGCSNSWICKNSACRAVLSIDDTFCKRCSCCICHLFDDNKDPSLWLVCTSDNGQGDSCELSCHIECALQREKVGVVD LGQLMQLDGSYCCASCGKVSGILGSWKKHLIIAKDARRLDVLCYRIYLSYRLLDGTSRFKELHGIIKDAKAKIETEVGPVDGVSAKMARGIVSRLSVAGD VQKLCSLAIEKAEEWLTTVSSANPNCREDSLPAACRFLFEEVKSSSVVIILIELSTALSDDIKGYKLWYCKSREETHAKEPICMFPRSQRRILISNLQPC TEYTFRIVSYTEAGDLGHSEAKCFTKSIEIIQKNPNPSVARNGKKENTVTGGYTSSYNRDSKTTTAVNSSGFMVRDLGKILHLAGAQKQGCFEGFCSADT EKCCGGSKVVKPQTSEDPVPSISHGLDLNVVSVPDLNEELTPFESSRDEDNGCTLEQAIEADDDAASHDVEKNDLARSHGTGDSQTWMHGPSREVPTVDS RSELCRKRAAHTNEDVHDCDSTLINESPFRVSSGSGYLDENFEYCVKAIRWLECEGYINQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLGGQL VDSFSDIISSKRPRNGFCGKLWH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Potri.006G158676 [exp]	0	1
AT1G08660		MGP2	MALE GAMETOPHYTE DEFECTIVE 2 (...		Potri.014G145400 [exp]	1.41	0.7284
AT2G05230			DNAJ heat shock N-terminal dom...		Potri.002G221000 [exp]	16.09	0.6439
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Potri.016G075500 [exp]	17.49	0.6573
AT3G24530			AAA-type ATPase family protein...		Potri.006G158600 [exp]	19.23	0.6368
AT1G51540			Galactose oxidase/kelch repeat...		Potri.010G252100 [exp]	26.11	0.6075
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Potri.010G241800 [exp]	27.22	0.6214
AT5G53480			ARM repeat superfamily protein...		Potri.012G017500 [exp]	32.04	0.5520
AT5G02410		ALG10	homolog of yeast ALG10, DIE2/A...		Potri.006G084800 [exp]	33.04	0.6172
AT4G30996		NKS1	NA\(+\)- AND K\(+\)-SENSITIVE ...		Potri.006G187800 [exp]	34.64	0.6380
AT1G73820			Ssu72-like family protein (.1)		Potri.015G036600 [exp]	47.43	0.5979

Compare expression of checked genes

Potri.006G158676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.