Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18830 476 / 9e-165 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT4G36670 451 / 2e-155 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G16130 447 / 2e-153 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT2G16120 444 / 2e-152 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G18480 417 / 3e-142 AtPLT3 Major facilitator superfamily protein (.1) AT2G20780 408 / 4e-138 AtPLT4 Major facilitator superfamily protein (.1) AT2G43330 205 / 6e-60 ATINT1 inositol transporter 1 (.1) AT5G59250 177 / 2e-49 Major facilitator superfamily protein (.1) AT5G26340 176 / 3e-49 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT5G17010 174 / 1e-48 Major facilitator superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G113600 [exp] 458 / 1e-157 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G151725 [exp] 449 / 2e-154 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G152300 [exp] 449 / 5e-154 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G027900 [exp] 427 / 5e-146 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.013G135200 [exp] 413 / 4e-140 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 404 / 1e-136 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.007G126800 [exp] 204 / 1e-59 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.017G032200 [exp] 202 / 5e-59 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.019G055600 [exp] 182 / 1e-51 AT5G17010 662 / 0.0 Major facilitator superfamily protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023640 [exp] 646 / 0 AT3G18830 516 / 7e-180 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10040482 [exp] 479 / 3e-166 AT3G18830 722 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011288 [exp] 477 / 3e-165 AT3G18830 721 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10042339 [exp] 477 / 6e-165 AT3G18830 735 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10035255 [exp] 449 / 4e-154 AT3G18830 656 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10034623 [exp] 446 / 4e-153 AT3G18830 652 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10006971 [exp] 444 / 2e-152 AT3G18830 631 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10041731 [exp] 439 / 9e-151 AT4G36670 664 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Lus10011287 [exp] 431 / 3e-147 AT3G18830 692 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10026032 [exp] 411 / 2e-139 AT4G36670 645 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.006G158700.1 pacid=42767396 polypeptide=Potri.006G158700.1.p locus=Potri.006G158700 ID=Potri.006G158700.1.v4.1 annot-version=v4.1 ATGGCTGACACTGAACTTGCTCAAGCCCTAGAAGCCATTTCACCGGTGGGAGTTCATAGTCCTACAAATATTAAGCCTCACCGTCTCAACATCCATGCTC TTGCTTGTGCTCTTCTGGCCTCTACAAACTCCATCTTATTAGGCTATGATATCGGTGTGATGAGTGGTGCAGTGCTCTTTATCAAAGAAAACCTAGAAAT CTCATCTACTCAGGTAGAGATATTGGTTGGTGTTCTAAATGAAAAACCTCAAGATTATATAGGCAGGCGTTATACCATAGTCTTAGCAGCCACAACATTT TTAATCGGTGCACTTCTAATGGGCTTGGCACCATCCTTCCCATTCCTCATGGCCGGCCGTGTCATTGCCGGTGTCGGGGTTGGATATTCCCTCATGATTG CTCCGGTCTACTCCGCTGAGATCTCCCCGGCAATGGCACGCGGCTTTCTTACCTCCCTTCCTGAGGTTTTCATTGTTTTTGGCATTCTCCTTGGTTACAT TGTTAACTATGCGTTATCAGGTCTCCCACAGCATATTAACTGGAGGCTAATGTTGGGTCTTGCTGCTATACCTTCGTTGTTAATTGGCTGTGGTGTTATA GCAATGCCTGAATCCCCTCGTTGGCTTGTAATGCAAGGTAGGTTGGACGATGCAAAGCAGGTCTTGATTAAAATATCTGATACAATACAAGAAGCTGATT TCAGACTCAATTCTTCAAGTGCTAAATGGCATGGGCATGGGGTATATAAGGAACTACTGTTGAGACCTTCTCGGCCTGTTCGCCGAATGCTTATTGCTGC TCTAGGGATTAATTTCTTCATGCAAGCTTCAGGCAATGACGCTGTTATATATTACTGCCCAGAAGTGTTCAAGGATGCAGGAATTCACAGCAAGAAAGTG CTCTTTGGTGTTAATGTCATCATGGGATCTGCCAAAACTTCTTTTGTGTTGTTCTCAGCTCTTTTTCTGGACCGGTTTGGTAGGCGGCCTCTTTTTTTGT TGGGCTCAGCTGGAATGGCGTTGTCGTTGGCTGTTTTGGGAATGAGCTCTAAGTTTCTCGAGCATTCCAACAGTAAGCCTATGTGGGCTATCGTGTTATG CGTCGTGGCTGTGTGTGGGGTTGTTTCTTTCTTTTCTATAGGGCTTGGGCCAATCACATGGGTCTACTCGTCGGAGATATTTCCACTGAGATTACGGGCT CAAGGTTCAGGCCTGGCCATATCTGTTAACCGGCTGGTCAGCGGAGTTATGTCTATGACATTTTTAACCATTTCAAAGAAGATAACATTCGGAGGAATGT TTTTTGTGCTATCTGGAATAATGGTAGTGGCCACGGTGTTCTTTTATGTCTTTATGCCGGAGACAAAAGGGAAGACCTTAGAAGAGATTGGGGCTCTCTT CGAGGATAAGAATGCGGAAGCAAGCATTGACTATGGAAGAGAAATGGGATAA
AA sequence Show only first row Show all	>Potri.006G158700.1 pacid=42767396 polypeptide=Potri.006G158700.1.p locus=Potri.006G158700 ID=Potri.006G158700.1.v4.1 annot-version=v4.1 MADTELAQALEAISPVGVHSPTNIKPHRLNIHALACALLASTNSILLGYDIGVMSGAVLFIKENLEISSTQVEILVGVLNEKPQDYIGRRYTIVLAATTF LIGALLMGLAPSFPFLMAGRVIAGVGVGYSLMIAPVYSAEISPAMARGFLTSLPEVFIVFGILLGYIVNYALSGLPQHINWRLMLGLAAIPSLLIGCGVI AMPESPRWLVMQGRLDDAKQVLIKISDTIQEADFRLNSSSAKWHGHGVYKELLLRPSRPVRRMLIAALGINFFMQASGNDAVIYYCPEVFKDAGIHSKKV LFGVNVIMGSAKTSFVLFSALFLDRFGRRPLFLLGSAGMALSLAVLGMSSKFLEHSNSKPMWAIVLCVVAVCGVVSFFSIGLGPITWVYSSEIFPLRLRA QGSGLAISVNRLVSGVMSMTFLTISKKITFGGMFFVLSGIMVVATVFFYVFMPETKGKTLEEIGALFEDKNAEASIDYGREMG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Potri.006G158700 [exp]	0	1
AT3G21720		ICL	isocitrate lyase (.1)		Potri.017G036900 [exp]	1.41	0.9909	ICL1.1
AT3G21720		ICL	isocitrate lyase (.1)		Potri.007G122900 [exp]	2.00	0.9900	Pt-ICL1.2
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Potri.014G001200 [exp]	6.00	0.9877
					Potri.006G271692 [exp]	8.12	0.9822
AT5G06370			NC domain-containing protein-r...		Potri.013G043100 [exp]	8.36	0.9835
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G179400 [exp]	9.48	0.9788
					Potri.008G155600 [exp]	9.84	0.9493
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.007G141125 [exp]	12.48	0.9780
					Potri.006G271586 [exp]	15.74	0.9595
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.017G010000 [exp]	18.16	0.9684

Compare expression of checked genes

Potri.006G158700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.