Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24480 617 / 0 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 601 / 0 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT4G18670 590 / 0 Leucine-rich repeat (LRR) family protein (.1) AT5G25550 445 / 9e-153 Leucine-rich repeat (LRR) family protein (.1) AT1G62440 451 / 9e-150 LRX2 leucine-rich repeat/extensin 2 (.1) AT1G12040 437 / 2e-145 LRX1 leucine-rich repeat/extensin 1 (.1) AT3G22800 427 / 4e-145 Leucine-rich repeat (LRR) family protein (.1) AT1G49490 417 / 1e-136 Leucine-rich repeat (LRR) family protein (.1) AT4G33970 413 / 2e-136 Leucine-rich repeat (LRR) family protein (.1) AT3G19020 414 / 4e-134 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G075900 [exp] 743 / 0 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G245600 [exp] 535 / 0 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.018G035100 [exp] 497 / 2e-170 AT3G24480 483 / 4e-166 Leucine-rich repeat (LRR) family protein (.1) Potri.006G081200 [exp] 476 / 2e-159 AT1G62440 553 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.018G151000 [exp] 460 / 5e-157 AT1G62440 533 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.010G083000 [exp] 428 / 2e-146 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083100 [exp] 415 / 5e-142 AT3G22800 447 / 2e-156 Leucine-rich repeat (LRR) family protein (.1) Potri.004G146350 [exp] 416 / 3e-136 AT2G15880 600 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.009G108100 [exp] 414 / 3e-132 AT3G19020 567 / 0.0 Leucine-rich repeat (LRR) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017727 [exp] 607 / 0 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10037905 [exp] 436 / 1e-148 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10028097 [exp] 430 / 6e-145 AT1G62440 466 / 7e-157 leucine-rich repeat/extensin 2 (.1) Lus10039362 [exp] 401 / 4e-136 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10039363 [exp] 405 / 8e-135 AT3G22800 447 / 1e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10006611 [exp] 395 / 4e-133 AT3G22800 434 / 3e-150 Leucine-rich repeat (LRR) family protein (.1) Lus10033672 [exp] 386 / 7e-130 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) Lus10041190 [exp] 383 / 1e-128 AT3G22800 421 / 3e-145 Leucine-rich repeat (LRR) family protein (.1) Lus10012047 [exp] 390 / 6e-128 AT3G19020 508 / 6e-172 Leucine-rich repeat (LRR) family protein (.1) Lus10021001 [exp] 388 / 3e-127 AT3G19020 490 / 1e-165 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G158814.1 pacid=42769785 polypeptide=Potri.006G158814.1.p locus=Potri.006G158814 ID=Potri.006G158814.1.v4.1 annot-version=v4.1 ATGAAGAATAAGACCCCCTTCCCTATTCATCTCTCCCTTGTCATTGCCTTTTTTCTAGGCACAGTTGTATGCCTCTCTGTTGCTCAACAAACACCAACTA TCTCGAGCTATGGAGGAGGCCTCAGTGATGCTGAAGCTATGTACATCGACAAGCGGCAGCTTCTTTACTACAAAGATGAATTTGGTGATAGAGGAGAGAG AGTCACAGTAGACCCATCTCTAGTTTTTGAGAATCCAAGACTTAAAAATGCTTACATGGCATTACAAGCTTGGAAACAAGCCATTTTCTCAGACCCTCTA AATCTAACAGCCAATTGGGTTGGGTCTCAAGTTTGCAACTATGAGGGGGTTTTCTGTTCTCGAGCTCCAGACAACAAAACAATCCGTACAGTTGCCGGCA TTGATCTCAACCATGGTGATATTGCCGGCTACTTGCCAGAGGAGCTTGGCTTCCTGGTGGATCTTGCATTGTTTCACATCAACTCCAACAGGTTTTGTGG GACTATACCTCACAAGTTCAAGAAACTGAGGTTACTCTTTGAACTGGATCTTAGCAACAACCGGTTTGCTGGGAAATTCCCACAAGTTGTGCTCAAGCTA CCTTCACTCAAATTCTTGGATCTGAGATTCAACGAATTTGAGGGCACTGTACCGAAAGAGCTATTTGATAAGGACTTGGATGCAATCTTTATCAATCACA ATAGGTTCGTTTTCGATCTGCCTGTAAACTTTGGCAACTCCCCAGTATCAGTCATTGTTTTGGCAAACAACAAGTTCCACGGATGTGTGCCATCAAGCTT AGGTAACATGTCAAATCTCAATGAAATCATCCTCATGAACAATGGATTTAGATCTTGCTTGCCAGCAGAGATAGGTTTGCTTAAAAACCTGACAGTGTTC GATGTTAGCTTCAATCAATTGATAGGTCCATTACCTGATACAGTTGGCGGGATGGTGAGTCTTGAACAGCTCAATGTAGCTCACAACATGCTCTCTGGGA AGATTCCGGCAAGCATTTGTCAGTTGCCGAATTTAGAGAACTTCACCTTCTCTTATAACTTCTTCACTGGAGAGCCACCAGTTTGCTTGAGTCTGCCGGA TTTCAGTGACAGGAGAAATTGTTTGCCAGGAAGACCAGAACAGAGATCTGCAGCACAATGTAAGGCTTTTTTGTCTATGCCTGTTGATTGTAGCTCGTTT AGATGTGCTCCTTTTGTTCCATCGTTGCCTGCTCCTCCTCCGCCTTCACCTCCAGTGCCAGTACTTTCACCTCCACCACCGGTTGTTATTCCAAAGTCAC CACCAGCTCCTCCACCACCAGTTTACTCACCGCCGCCACCACCAGTATACTCTCCGCCTCCACTACCGCCAGTGTATTCACCACCACCACCGCCTCCTCC CCCACCTTGTATAGAACCGCCTCCACCATCACCGCCTCCGCCAATACATTATAGCCCACCACAACCACGTCCAGTTCATTACCGTTCACCTCCCCGACCA TCACTGCTTCCACCAGTTAACTACCATTCGCCCCCACCACCATCGCTTCCACCGCCAATTCCATGCGAAAACCCTCCACCACCATCCCCACCCCCACCCC CACCCCCACCCCCACCGATAATCTATGGAAGTCCGCCCCCTCCGACTCCAGTGTATGAGGGGCCATTACCACCAGTCACAGGGGTGTCATACGCTTCACC CCCACCCCCACCCTTCTATTGA
AA sequence Show only first row Show all	>Potri.006G158814.1 pacid=42769785 polypeptide=Potri.006G158814.1.p locus=Potri.006G158814 ID=Potri.006G158814.1.v4.1 annot-version=v4.1 MKNKTPFPIHLSLVIAFFLGTVVCLSVAQQTPTISSYGGGLSDAEAMYIDKRQLLYYKDEFGDRGERVTVDPSLVFENPRLKNAYMALQAWKQAIFSDPL NLTANWVGSQVCNYEGVFCSRAPDNKTIRTVAGIDLNHGDIAGYLPEELGFLVDLALFHINSNRFCGTIPHKFKKLRLLFELDLSNNRFAGKFPQVVLKL PSLKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFVFDLPVNFGNSPVSVIVLANNKFHGCVPSSLGNMSNLNEIILMNNGFRSCLPAEIGLLKNLTVF DVSFNQLIGPLPDTVGGMVSLEQLNVAHNMLSGKIPASICQLPNLENFTFSYNFFTGEPPVCLSLPDFSDRRNCLPGRPEQRSAAQCKAFLSMPVDCSSF RCAPFVPSLPAPPPPSPPVPVLSPPPPVVIPKSPPAPPPPVYSPPPPPVYSPPPLPPVYSPPPPPPPPPCIEPPPPSPPPPIHYSPPQPRPVHYRSPPRP SLLPPVNYHSPPPPSLPPPIPCENPPPPSPPPPPPPPPPIIYGSPPPPTPVYEGPLPPVTGVSYASPPPPPFY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24480			Leucine-rich repeat (LRR) fami...		Potri.006G158814 [exp]	0	1
AT2G33570			Domain of unknown function (DU...		Potri.005G258900 [exp]	2.23	0.8607
AT3G25700			Eukaryotic aspartyl protease f...		Potri.008G115900 [exp]	4.00	0.8855
AT3G05020		ACP1	acyl carrier protein 1 (.1)		Potri.013G031300 [exp]	7.48	0.8376
AT2G05790			O-Glycosyl hydrolases family 1...		Potri.014G158400 [exp]	8.30	0.8719
AT3G54400			Eukaryotic aspartyl protease f...		Potri.003G195500 [exp]	11.22	0.7531
AT4G30320			CAP (Cysteine-rich secretory p...		Potri.006G171300 [exp]	12.00	0.8241
					Potri.004G101600 [exp]	12.00	0.8548
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Potri.017G099100 [exp]	12.48	0.8304
AT3G28200			Peroxidase superfamily protein...		Potri.001G351000 [exp]	15.09	0.8681
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Potri.005G225700 [exp]	16.43	0.7956

Compare expression of checked genes

Potri.006G158814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.