Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19590 201 / 3e-67 Protein of unknown function, DUF538 (.1) AT1G02816 87 / 3e-22 Protein of unknown function, DUF538 (.1) AT4G02360 86 / 5e-22 Protein of unknown function, DUF538 (.1) AT1G02813 85 / 1e-21 Protein of unknown function, DUF538 (.1) AT4G02370 85 / 2e-21 Protein of unknown function, DUF538 (.1) AT1G55265 82 / 2e-20 Protein of unknown function, DUF538 (.1) AT5G19860 73 / 8e-17 Protein of unknown function, DUF538 (.1) AT3G07460 60 / 8e-12 Protein of unknown function, DUF538 (.1.2) AT3G07470 59 / 2e-11 Protein of unknown function, DUF538 (.1) AT5G37070 58 / 6e-11 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G024000 [exp] 97 / 5e-26 AT1G02816 186 / 1e-60 Protein of unknown function, DUF538 (.1) Potri.014G127500 [exp] 91 / 7e-24 AT4G02370 167 / 1e-53 Protein of unknown function, DUF538 (.1) Potri.013G014600 [exp] 87 / 5e-22 AT1G02816 181 / 8e-59 Protein of unknown function, DUF538 (.1) Potri.014G127600 [exp] 86 / 3e-21 AT1G02816 206 / 4e-68 Protein of unknown function, DUF538 (.1) Potri.002G203400 [exp] 83 / 8e-21 AT1G02816 211 / 6e-71 Protein of unknown function, DUF538 (.1) Potri.001G008240 [exp] 80 / 2e-19 AT1G55265 137 / 8e-42 Protein of unknown function, DUF538 (.1) Potri.003G217300 [exp] 79 / 4e-19 AT1G55265 139 / 2e-42 Protein of unknown function, DUF538 (.1) Potri.001G008400 [exp] 78 / 1e-18 AT5G19860 205 / 5e-68 Protein of unknown function, DUF538 (.1) Potri.001G008320 [exp] 77 / 2e-18 AT1G55265 135 / 4e-41 Protein of unknown function, DUF538 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033088 [exp] 225 / 6e-77 AT5G19590 189 / 2e-62 Protein of unknown function, DUF538 (.1) Lus10017733 [exp] 216 / 5e-73 AT5G19590 189 / 8e-63 Protein of unknown function, DUF538 (.1) Lus10009855 [exp] 91 / 1e-23 AT1G02816 169 / 2e-54 Protein of unknown function, DUF538 (.1) Lus10009854 [exp] 86 / 2e-21 AT1G02816 184 / 3e-60 Protein of unknown function, DUF538 (.1) Lus10010297 [exp] 85 / 2e-21 AT1G02816 184 / 4e-60 Protein of unknown function, DUF538 (.1) Lus10039187 [exp] 74 / 7e-17 AT5G19860 190 / 4e-62 Protein of unknown function, DUF538 (.1) Lus10013752 [exp] 72 / 2e-16 AT5G19860 194 / 1e-63 Protein of unknown function, DUF538 (.1) Lus10039182 [exp] 71 / 9e-16 AT1G55265 135 / 1e-40 Protein of unknown function, DUF538 (.1) Lus10013756 [exp] 70 / 1e-15 AT1G55265 137 / 2e-41 Protein of unknown function, DUF538 (.1) Lus10025861 [exp] 71 / 2e-15 AT3G07470 171 / 4e-54 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [poplar] [flax] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Potri.006G158952.1 pacid=42768596 polypeptide=Potri.006G158952.1.p locus=Potri.006G158952 ID=Potri.006G158952.1.v4.1 annot-version=v4.1 ATGACCAAGCTTTTCTTTCTCATCTCTCTCATCCTCCTACCAATCACCTTTACCTCTCAATCAGAAAAACAGAAACCCCCAACTGCCGCCCACACCGAGC TCACAAACTACGGCTTCCCAATCGGGCTCCTCCCTTCCTCCGTAAAAAACTACACTTTCAACCAGACTTCTGGCGAATTCTCCGTCGATCTTGGTAGCGC GTGTAAGATCACGCTCCCTCCTGACAATTACTTAGCCACGTACTCCAAAAGGGTTAGTGGGAAGATTGTTGAGGGTCGGATCGCGGAACTGGATGGGATC CGGGTTCGGGCTTTTTTTAAATGGTGGTCGATAACGGGGATTAGTTCTAGTGGAGACAATTTGGTTTTTGAAGTTGGGATGATTACTGCTAAATATCCTT CCAAGAATTTTGATGAGAGTCCTCAGTGTGAGGGCAAACACTCTTCTTCTTAA
AA sequence Show only first row Show all	>Potri.006G158952.1 pacid=42768596 polypeptide=Potri.006G158952.1.p locus=Potri.006G158952 ID=Potri.006G158952.1.v4.1 annot-version=v4.1 MTKLFFLISLILLPITFTSQSEKQKPPTAAHTELTNYGFPIGLLPSSVKNYTFNQTSGEFSVDLGSACKITLPPDNYLATYSKRVSGKIVEGRIAELDGI RVRAFFKWWSITGISSSGDNLVFEVGMITAKYPSKNFDESPQCEGKHSSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19590			Protein of unknown function, D...		Potri.006G158952 [exp]	0	1
AT5G03905			Iron-sulphur cluster biosynthe...		Potri.006G084300 [exp]	7.21	0.8844
AT3G17609	bZIP	HYH	HY5-homolog (.1.2.3.4)		Potri.010G004200 [exp]	7.74	0.9216	HY5.1
AT2G47840		AtTic20-II	translocon at the inner envelo...		Potri.013G084900 [exp]	15.65	0.8813
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Potri.013G109000 [exp]	15.96	0.9189
AT5G24165			unknown protein		Potri.012G011600 [exp]	17.77	0.8459
AT1G34000		OHP2	one-helix protein 2 (.1)		Potri.002G065000 [exp]	23.32	0.9160	Lil6_1,OHP2.2
AT2G21320	CO		B-box zinc finger family prote...		Potri.005G117100 [exp]	24.14	0.9025
AT2G05620		PGR5	proton gradient regulation 5 (...		Potri.008G171000 [exp]	25.29	0.9050	PGR5.2
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G135001 [exp]	32.58	0.9035
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G007700 [exp]	36.98	0.8987

Compare expression of checked genes

Potri.006G158952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.