Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69430 78 / 3e-16 unknown protein AT1G26650 76 / 1e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G155900 [exp] 528 / 0 AT1G69430 79 / 2e-16 unknown protein Potri.010G163400 [exp] 85 / 1e-18 AT1G26650 453 / 1e-160 unknown protein Potri.008G091500 [exp] 79 / 2e-16 AT1G26650 401 / 3e-140 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036796 [exp] 76 / 2e-15 AT1G69430 434 / 4e-153 unknown protein Lus10037135 [exp] 76 / 2e-15 AT1G69430 431 / 8e-152 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G159000.1 pacid=42768921 polypeptide=Potri.006G159000.1.p locus=Potri.006G159000 ID=Potri.006G159000.1.v4.1 annot-version=v4.1 ATGCCCAGAAGGACAGCACAAGTGCCTAACTCTTTTTATCTGATAAACACTCTTCATATCTTCAAAGAATCCATTAGAGTTATGCTTCTACATCCTACTC ATTTCCATTCAATCTCTATTTTTCTCTTCTCTCCTCTCCCAATCTCACTCTTCATCTCCCATTTTCTCACTCGCAGTTCTCCCCAGTTACCATTCTCAAC AACCAGCATAACAGATCATCTACTTGAACACTATGGAGTTCTCCCTCAACTGGCCTCCAAAACCTTAATACACATCATCATTTGCTTCCCCTCCTCCATC ACATTCGGGCTCCTTGGACAAGCCGCTACTGTTCAACTAGTTTCAGACAGCTACAATGGAATAAACCTCAACGGAAGACGGTTACTTGTGAGAAGCGGGG CAGCTTGGATTAAGCTTCTCCGAACTTGTTTTTGGGAGTTACTTATCCTGCTTGCTCTTTGGGTGATTTTTGTTGCTACTTTGGTGTCAGTTCCTGGTAC ACTGTTTGCTTATGGAATATGTTCTAGAATGCTAGGATTACGGGTAATTCTGGGGTTTCTAGGAGCACCCTTCTGTCTGGCATTTGCGCATCTTGTGGTT GTAGCAAATTTAGCCAAGGTTTTGGCAGTTTTGGAGAGTGAGTGCTGTGGGTTTAAATCATTAGTTAAGGCCAGTAATATGATGGCCGGGAGACAGCAAA CAGCTCTAGTTATGGCTTTGTTGAGTAATATGGGACTTGGACTAGTTCAGTGTTTGTTTGAGTTTAAGATGAGCAAGGGCATCAGTTTTTGGGAAGGGCC CATGCTGGTATCTATGTATTCCACGGTGCTTGTTTTTGACACTGTTACTACTGTTGTATTCTATTATGCCTGTAAACCTTGA
AA sequence Show only first row Show all	>Potri.006G159000.1 pacid=42768921 polypeptide=Potri.006G159000.1.p locus=Potri.006G159000 ID=Potri.006G159000.1.v4.1 annot-version=v4.1 MPRRTAQVPNSFYLINTLHIFKESIRVMLLHPTHFHSISIFLFSPLPISLFISHFLTRSSPQLPFSTTSITDHLLEHYGVLPQLASKTLIHIIICFPSSI TFGLLGQAATVQLVSDSYNGINLNGRRLLVRSGAAWIKLLRTCFWELLILLALWVIFVATLVSVPGTLFAYGICSRMLGLRVILGFLGAPFCLAFAHLVV VANLAKVLAVLESECCGFKSLVKASNMMAGRQQTALVMALLSNMGLGLVQCLFEFKMSKGISFWEGPMLVSMYSTVLVFDTVTTVVFYYACKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69430			unknown protein		Potri.006G159000 [exp]	0	1
AT1G69430			unknown protein		Potri.006G155900 [exp]	1.00	0.9950
AT3G03550			RING/U-box superfamily protein...		Potri.019G043900 [exp]	5.09	0.8882
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Potri.007G121400 [exp]	6.48	0.9071
AT3G42800			unknown protein		Potri.018G065000 [exp]	6.78	0.9090
AT5G03260		LAC11	laccase 11 (.1)		Potri.004G156400 [exp]	7.68	0.8505
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.011G061300 [exp]	9.38	0.8792	Pt-RAB11.12
AT1G20010		TUB5	tubulin beta-5 chain (.1)		Potri.005G239900 [exp]	9.48	0.8901
					Potri.001G297466 [exp]	11.66	0.9045
AT5G04310			Pectin lyase-like superfamily ...		Potri.008G032700 [exp]	14.31	0.8611
AT1G22760		PAB3	poly(A) binding protein 3 (.1)		Potri.005G198500 [exp]	15.09	0.8822

Compare expression of checked genes

Potri.006G159000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.