Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24577 43 / 6e-07 unknown protein AT1G67910 43 / 9e-07 unknown protein AT3G13227 42 / 2e-06 serine-rich protein-related (.1) AT5G55980 41 / 6e-06 serine-rich protein-related (.1) AT1G52342 40 / 8e-06 unknown protein AT5G20370 42 / 1e-05 serine-rich protein-related (.1) AT3G56500 39 / 3e-05 serine-rich protein-related (.1) AT5G25280 37 / 0.0006 serine-rich protein-related (.1.2) AT5G11090 36 / 0.001 serine-rich protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G078900 [exp] 132 / 3e-42 AT3G13227 42 / 3e-06 serine-rich protein-related (.1) Potri.010G046700 [exp] 42 / 2e-06 AT1G67910 82 / 4e-22 unknown protein Potri.008G186200 [exp] 40 / 2e-05 AT1G67910 85 / 4e-23 unknown protein Potri.001G371400 [exp] 39 / 7e-05 AT5G55980 50 / 2e-08 serine-rich protein-related (.1) Potri.018G079200 [exp] 38 / 0.0001 AT1G67910 45 / 9e-08 unknown protein Potri.006G060700 [exp] 38 / 0.0001 AT5G11090 66 / 4e-14 serine-rich protein-related (.1) Potri.018G120300 [exp] 37 / 0.0003 AT5G11090 67 / 1e-14 serine-rich protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023630 [exp] 61 / 7e-14 AT1G67910 44 / 2e-07 unknown protein Lus10043217 [exp] 52 / 2e-10 AT1G52342 48 / 7e-09 unknown protein Lus10008880 [exp] 44 / 1e-06 AT5G55980 63 / 1e-13 serine-rich protein-related (.1) Lus10023632 [exp] 42 / 2e-06 AT1G67910 48 / 1e-08 unknown protein Lus10034901 [exp] 42 / 2e-06 AT1G67910 49 / 6e-09 unknown protein Lus10023227 [exp] 43 / 3e-06 AT5G55980 69 / 3e-16 serine-rich protein-related (.1) Lus10026701 [exp] 38 / 0.0001 AT1G67910 56 / 5e-12 unknown protein Lus10038100 [exp] 39 / 0.0002 AT5G25280 145 / 4e-43 serine-rich protein-related (.1.2) Lus10006660 [exp] 39 / 0.0002 AT5G25280 144 / 4e-43 serine-rich protein-related (.1.2) Lus10000442 [exp] 37 / 0.0003 AT1G67910 56 / 1e-11 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G159300.1 pacid=42767944 polypeptide=Potri.006G159300.1.p locus=Potri.006G159300 ID=Potri.006G159300.1.v4.1 annot-version=v4.1 ATGTGTCACCCTGGTGTGCTTTCGGTTAGCCAAAGGAACTTGGTGGTGTATCAGAGAAGGCTCGTTTTGCAAGCAGTTGAGACAGAAACTTCACATGCAC GAACAGAGGTGGCTGCTGGTGGCGGAAGTGCTATTTCTAGATCGATAAACAAGTGTTTGTGTTCACCCACAAGGCACCCGGGATCCTTCAGGTGCAGGCA CCACCGTTCTGATTATGTGTGGAGTGGGAGAATAACAAGAAAGAAGCAACTCCTTGAAAAGGTATGA
AA sequence Show only first row Show all	>Potri.006G159300.1 pacid=42767944 polypeptide=Potri.006G159300.1.p locus=Potri.006G159300 ID=Potri.006G159300.1.v4.1 annot-version=v4.1 MCHPGVLSVSQRNLVVYQRRLVLQAVETETSHARTEVAAGGGSAISRSINKCLCSPTRHPGSFRCRHHRSDYVWSGRITRKKQLLEKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24577			unknown protein		Potri.006G159300 [exp]	0	1
AT5G53190		SWEET3, AtSWEET...	Nodulin MtN3 family protein (....		Potri.012G031400 [exp]	5.91	0.8499
AT3G63110		ATIPT3	isopentenyltransferase 3 (.1)		Potri.014G139300 [exp]	6.24	0.8403
AT2G30540			Thioredoxin superfamily protei...		Potri.014G134300 [exp]	8.24	0.8398
AT3G58720			RING/U-box superfamily protein...		Potri.014G139400 [exp]	8.48	0.8406
AT1G68740		PHO1;H1	EXS (ERD1/XPR1/SYG1) family pr...		Potri.008G110800 [exp]	9.00	0.8130
AT1G53160	SBP	SPL4	squamosa promoter binding prot...		Potri.004G046700 [exp]	11.83	0.8114
AT2G46690			SAUR-like auxin-responsive pro...		Potri.014G103300 [exp]	12.20	0.6672	SAUR24
AT4G31240			protein kinase C-like zinc fin...		Potri.006G279400 [exp]	12.44	0.8188
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.015G120100 [exp]	13.22	0.8167
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.005G060000 [exp]	15.87	0.7920

Compare expression of checked genes

Potri.006G159300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.