Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24600 184 / 5e-54 Late embryogenesis abundant protein, group 2 (.1) AT5G42860 166 / 5e-49 unknown protein AT1G45688 164 / 3e-48 unknown protein AT4G35170 129 / 2e-35 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G41990 106 / 2e-26 unknown protein AT3G08490 80 / 4e-17 unknown protein AT3G11660 48 / 2e-06 NHL1 NDR1/HIN1-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G183600 [exp] 291 / 4e-98 AT1G45688 185 / 4e-56 unknown protein Potri.003G052900 [exp] 284 / 2e-95 AT1G45688 176 / 6e-53 unknown protein Potri.007G045000 [exp] 210 / 3e-66 AT1G45688 273 / 4e-90 unknown protein Potri.002G124600 [exp] 190 / 2e-58 AT1G45688 284 / 1e-94 unknown protein Potri.014G026800 [exp] 178 / 8e-54 AT1G45688 301 / 2e-101 unknown protein Potri.004G180900 [exp] 166 / 2e-49 AT2G41990 256 / 1e-84 unknown protein Potri.009G140600 [exp] 154 / 9e-45 AT2G41990 232 / 5e-75 unknown protein Potri.009G061300 [exp] 95 / 4e-22 AT3G08490 209 / 7e-66 unknown protein Potri.001G267200 [exp] 91 / 8e-21 AT3G08490 196 / 6e-61 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023652 [exp] 272 / 2e-90 AT1G45688 183 / 2e-55 unknown protein Lus10034926 [exp] 267 / 2e-88 AT1G45688 182 / 5e-55 unknown protein Lus10035869 [exp] 265 / 2e-87 AT1G45688 219 / 3e-69 unknown protein Lus10025793 [exp] 264 / 2e-87 AT1G45688 221 / 5e-70 unknown protein Lus10029743 [exp] 188 / 2e-57 AT1G45688 301 / 4e-101 unknown protein Lus10010232 [exp] 177 / 2e-53 AT1G45688 416 / 3e-146 unknown protein Lus10009749 [exp] 169 / 9e-51 AT5G42860 256 / 2e-84 unknown protein Lus10022644 [exp] 141 / 1e-39 AT4G35170 279 / 4e-93 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003341 [exp] 123 / 2e-32 AT2G41990 221 / 4e-70 unknown protein Lus10029519 [exp] 84 / 5e-18 AT3G08490 223 / 7e-71 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF03168 [poplar] [flax] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Potri.006G160100.1 pacid=42769137 polypeptide=Potri.006G160100.1.p locus=Potri.006G160100 ID=Potri.006G160100.1.v4.1 annot-version=v4.1 ATGTTGCACGCCATATCGGAATCGGACATGACAAGCATGTCACCATCGTCGCCACGATCTCCAAAACGCCCCGTCTTGTACTACGTGCAGAGCCCATCAC GTGACTCGCACGACGGCGATAAGTCCTCTTCAATGCAAACCACTCCTGCCTACGCCAGCTCCATGGAGTCCCCTTCCCACCTCTCTTACGGCCGCCACTC TCTGTCATCGTCCGCCAGCAGGGTTTCCGGGGGTGGTTATGGGTGGAAAGGGAGAAGCAAGAGTAAGGGGTGGCCTCAGTCAAAGTGTGATGATGTTATC GAAGAGGAAGGAGATTATGATCCTTATGGAAATGGGGTTTCAAGGAGGTGGCTCTGTCAGGTTTTGATTTGGGCTTCGGGTTTTGTTTCGGCTTTGTGTG TCTTTTGCTTCATCATTTGGGGCGCCAGCAGGCCTTTCAAACCCCAAATTACTGTTAAGAGCTTGACTGTACATAATTTTTACTTTGGTGAAGGTTCGGA CATGACAGGAGTCCCAACCAAGATGTTGACTGTGAGTTGTTCAGTGAAGATGAATGTGTACAACTCGGCTACCTTTTTCGGCATTCACGTCAGTTCCATT CCTGTCAATCTTATGTATTCAGAGCTGACAGTTGCAACTGGTGAGTTGAAAAGATACTTTCAACCAAGAAAGAGCCACCGGACTGTGTCAGTGAATCTAA AAGGAACAAAGGTTCCGCTGTATGGCGCAGGGGCGGGCATAGCAGCATCAGAAGACAATGGGGGAGTTCCAATGACTTTAGTTTTTGAAGTCAGGTCAAT AGGGAATGTTGTGGGAAAATTGGTGAAGCCGAGGCATAGAAGGCGAGTCGCTTGCTCTTTGGCAATTGATTCTCGTAGCAGCAAAGTCATCATATTTAAG GAGGATTCGTGCACGTATCATTGA
AA sequence Show only first row Show all	>Potri.006G160100.1 pacid=42769137 polypeptide=Potri.006G160100.1.p locus=Potri.006G160100 ID=Potri.006G160100.1.v4.1 annot-version=v4.1 MLHAISESDMTSMSPSSPRSPKRPVLYYVQSPSRDSHDGDKSSSMQTTPAYASSMESPSHLSYGRHSLSSSASRVSGGGYGWKGRSKSKGWPQSKCDDVI EEEGDYDPYGNGVSRRWLCQVLIWASGFVSALCVFCFIIWGASRPFKPQITVKSLTVHNFYFGEGSDMTGVPTKMLTVSCSVKMNVYNSATFFGIHVSSI PVNLMYSELTVATGELKRYFQPRKSHRTVSVNLKGTKVPLYGAGAGIAASEDNGGVPMTLVFEVRSIGNVVGKLVKPRHRRRVACSLAIDSRSSKVIIFK EDSCTYH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24600			Late embryogenesis abundant pr...		Potri.006G160100 [exp]	0	1
					Potri.003G016275 [exp]	4.47	0.7308
AT5G50170			C2 calcium/lipid-binding and G...		Potri.015G083500 [exp]	6.48	0.7158
AT1G10240	FAR1_related	FRS11	FAR1-related sequence 11 (.1)		Potri.008G108800 [exp]	9.74	0.7288
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Potri.005G207300 [exp]	10.58	0.6949
AT5G27550			P-loop containing nucleoside t...		Potri.005G031850 [exp]	12.16	0.7435
AT3G01720			unknown protein		Potri.001G336400 [exp]	16.06	0.7318
AT2G04100			MATE efflux family protein (.1...		Potri.017G120400 [exp]	16.58	0.7000
AT1G30760			FAD-binding Berberine family p...		Potri.011G161300 [exp]	20.49	0.7003
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Potri.015G016300 [exp]	22.04	0.7013
AT3G24180			Beta-glucosidase, GBA2 type fa...		Potri.003G178000 [exp]	33.34	0.7064

Compare expression of checked genes

Potri.006G160100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.