Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32230 404 / 6e-131 PRORP1 proteinaceous RNase P 1 (.1) AT2G16650 353 / 6e-112 PRORP2 proteinaceous RNase P 2 (.1) AT4G21900 344 / 7e-108 PRORP3 proteinaceous RNase P 3 (.1) AT5G60430 69 / 2e-13 drug transmembrane transporters;antiporters (.1.2) AT1G13040 56 / 7e-08 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G15630 49 / 1e-05 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62720 49 / 1e-05 AtNG1 novel gene 1, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04760 49 / 2e-05 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G48810 49 / 2e-05 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G38420 45 / 0.0001 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G144900 [exp] 426 / 5e-139 AT2G32230 671 / 0.0 proteinaceous RNase P 1 (.1) Potri.004G074100 [exp] 423 / 7e-138 AT2G32230 662 / 0.0 proteinaceous RNase P 1 (.1) Potri.009G145200 [exp] 366 / 3e-116 AT2G16650 568 / 0.0 proteinaceous RNase P 2 (.1) Potri.004G185200 [exp] 341 / 5e-107 AT2G16650 573 / 0.0 proteinaceous RNase P 2 (.1) Potri.018G004400 [exp] 49 / 1e-05 AT5G24830 500 / 2e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G020501 [exp] 47 / 1e-05 AT1G07740 218 / 4e-70 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G136700 [exp] 47 / 4e-05 AT1G62680 175 / 4e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G047000 [exp] 46 / 0.0001 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G147700 [exp] 45 / 0.0002 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043223 [exp] 566 / 0 AT2G32230 433 / 2e-142 proteinaceous RNase P 1 (.1) Lus10039049 [exp] 416 / 2e-135 AT2G32230 627 / 0.0 proteinaceous RNase P 1 (.1) Lus10038809 [exp] 409 / 1e-132 AT2G32230 615 / 0.0 proteinaceous RNase P 1 (.1) Lus10038817 [exp] 343 / 3e-108 AT2G32230 555 / 0.0 proteinaceous RNase P 1 (.1) Lus10019535 [exp] 327 / 2e-101 AT4G21900 607 / 0.0 proteinaceous RNase P 3 (.1) Lus10014928 [exp] 294 / 1e-89 AT2G32230 503 / 1e-174 proteinaceous RNase P 1 (.1) Lus10043379 [exp] 237 / 1e-70 AT4G21900 369 / 7e-125 proteinaceous RNase P 3 (.1) Lus10042529 [exp] 57 / 8e-08 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000909 [exp] 56 / 2e-07 AT1G74580 270 / 3e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004570 [exp] 56 / 2e-07 AT5G59900 290 / 9e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain CL0280 [poplar] [flax] PIN PF16953 [poplar] [flax] PRORP Protein-only RNase P
Representative CDS sequence Show only first row Show all	>Potri.006G160300.1 pacid=42768354 polypeptide=Potri.006G160300.1.p locus=Potri.006G160300 ID=Potri.006G160300.1.v4.1 annot-version=v4.1 ATGGCCTGCTTCACCTCTAACATTCTGCAGCAAAAGCATGTACTCTCAATCACTCTCTGTAAGTATCCATCGCCATCTCTTCATGCTTGCAAATTTCACT TTTTATCTCACATTCCTGGTTCCTCACCTCCCAAGCACACACCGCTTCTTGTAGCTACAACACTTGCTAGTAACATCCTACATGCAAAGTTATCTGCAAC TGACCATGATAGTCCAACCAAAACCATTAATTCAAGAACCAGAAAGGAAAATAATGCATTGGGGTTCCCTTCTTCAAGAAGAATAGCTAAAAGGGTAGAG AGAAAACATGTCAAAAACCTTACTACTTCTGTAGTTGACGAGAAGACTGAGAAGCGGTTTTCGAAGGATAGAAATACAAGAAAGAATATGGGTTTTAGAG AAAGTACAGGAATGGGTTCTGAGAATTGTACTAAAGATGGGAAAAAGGGCATTAGATTTTTGGCAACTATGGACAGTCAAGGAGTATGTGGTGAAATGGA GAGTAGAACAAAAAACGGTAGTGATATTCAAGTTATTAAAGTGGACAAAATTGGAAAAGGGTCTAAACAAGACAAGGTTGATTCATCAGAACTCAAGTTA CGAGTTAGGTTGGATATGTGCTCGAAAAGAGGAGATGTGATAGCTGCAATTCAATTATATGATTTGGCTCAGAGAGAAGGAATCAAGATGGGGCAGTATC ATTATGCTGTACTTTTGTATCTTTGTTCCTCTGCTGCTGTTGGTGGTGTTCAACCAGCTAAAAGCGGGAGTGAGAGTGTTGGGCGAGCCATCGATTCATT AGATGTGTCTAATGAAGTTTCGAATGTAAAATTTCAGGAGTTGAGTGAATTAAGGGATGAGGATGATAGAAAAGTTGGTGCTACTGAATTGCATATTCGT GTTTCCGACAATAGGAAGAAATTAGTCGATGCTGATAGAGAACCTGGAAGTATAGCTGAAATGGAGTTGAATCATGGCAGTACGTTTGGTAATTTAGATG ACAAGGAAAGTTTGGTCCAGTTTTTCAATGAGTGTAACAAGCTAAACTTTCAACACTTGGATGGACGGCCTTCACATGGAAAGGATAAAGATGTCAATAT ACATGGCACTCATGAAATTCAGTTCAGCGAAGATGTCAAGAAGTATGCACTTCAAAGGGGCTGTGAGATCTTTGAGAAAATGTGCAAGGAAAAGGTCCCA ATAAATGAAGCAACCTTGACAGCTGTGGCAAGAATGGCGATGTCAATTGGTAATGGTGATCTGGCCTTTGAAATGGTGAAACAGATGGACGCATTGGGGA TAAATCCTAAATTGCGGTCCTATGGACCTGCTCTATCTGTGTTTTGCAGTAGTGGAGACATCGACAAAGCATTTTATGTAGAGAAGCACATGTTGGAACA TGGTGTTTATCCAGAGGAGCCTGAATTGAAGGCACTCTTAAGAGTAAGTGTAGAAGGTGGTAAAGGTGACAAGGTTTATTATTTGCTACATAAACTACGA AGAATTGTAAGGAGGGTCTCGCCCTCTACTGCAGGCATAATTGTTAGATGGTTTAACAGCAAGGCAGCTTCAAGAGTGGGAAAAACAAAATGGGACGTTA AAGAAGCAATTGAAAATGGAGGTGGAGGTTGGCATGGGCAAGGTTGGCTGGGTAAGGGAAAGTGGACTGTTTCTTGTACATCTGTTGGGCTGGATGGAAT TTGCAAGTACTGTGGACAGAAATTGACCACAATTGACCTTGATGCTGTTGAAACAGAGAAATTTGCCGAATCAGTTGCTTCTATTGCCATAAAACGTGAC AGAGATTCAAGCTTTCAAAGATTTCAAAAATGGCTTGATTACTATGGACCTTTTGAAGCAGTGATAGACGGAGCAAATGCTGGTATTTACAACCAGGGAA GGTTCATGCCATCAAAGATCAATGCTGTTGTTAATGGTATACGTCAGAAGCTTCCTTCAAAAAAATGGCCACTCATTGTTCTGCATAACAAGCGAATCAC TGGACGCAAGATGGATGGACCGGTAAATAAAGCTTTCATTGAAAAGTGGAAAAATGCTGATGCACTTTATGCAACACCCACTGGATCAAATGATGATTGG TACTGGTTGTATGCAGCTATAAAGTTCAAGTGTTTAATTGTGACCAATGACGAGATGAGAGACCATACATTTCATCTTCTAGGAAACGACTTCTTCCCTA GATGGAAAGAAAGGCATCAGGTGCATTTCAGATTTACTGATGCTGGTCCAGATTTTGACATGCCTCCGCCTTGCTCTGTTGTAATTCAGGAATCAGAAAA AGGTCACTGGCATATTCCAATTGAAACAGAAGGCGAAGGCGAAGGCGAAGCAGAAAGAGAATGGTTATGCATTACACGGGCTAACTCGCGAACAACAAGA CATTCTATCACCACCACGCCTGGAGGATCACAGTCTGTTGGACATGGTAAGAAGCAAGCAAGGTCCTCCATGCAGACTAGAGTTGCGATAAAGCCAGATC GCTTAAAACATAACATCCCCGACAACATACGAAAGCCACCTCAAGACTACAAGAATCTCAAAAATATTCTTGCAGCATCAGGGTTCCCAGATCATCGCAC TGTTCTATCAGAAATTGAGACAGCAGAGGAACTTGGAGACACTGTTATTGACTTCCAGATATAA
AA sequence Show only first row Show all	>Potri.006G160300.1 pacid=42768354 polypeptide=Potri.006G160300.1.p locus=Potri.006G160300 ID=Potri.006G160300.1.v4.1 annot-version=v4.1 MACFTSNILQQKHVLSITLCKYPSPSLHACKFHFLSHIPGSSPPKHTPLLVATTLASNILHAKLSATDHDSPTKTINSRTRKENNALGFPSSRRIAKRVE RKHVKNLTTSVVDEKTEKRFSKDRNTRKNMGFRESTGMGSENCTKDGKKGIRFLATMDSQGVCGEMESRTKNGSDIQVIKVDKIGKGSKQDKVDSSELKL RVRLDMCSKRGDVIAAIQLYDLAQREGIKMGQYHYAVLLYLCSSAAVGGVQPAKSGSESVGRAIDSLDVSNEVSNVKFQELSELRDEDDRKVGATELHIR VSDNRKKLVDADREPGSIAEMELNHGSTFGNLDDKESLVQFFNECNKLNFQHLDGRPSHGKDKDVNIHGTHEIQFSEDVKKYALQRGCEIFEKMCKEKVP INEATLTAVARMAMSIGNGDLAFEMVKQMDALGINPKLRSYGPALSVFCSSGDIDKAFYVEKHMLEHGVYPEEPELKALLRVSVEGGKGDKVYYLLHKLR RIVRRVSPSTAGIIVRWFNSKAASRVGKTKWDVKEAIENGGGGWHGQGWLGKGKWTVSCTSVGLDGICKYCGQKLTTIDLDAVETEKFAESVASIAIKRD RDSSFQRFQKWLDYYGPFEAVIDGANAGIYNQGRFMPSKINAVVNGIRQKLPSKKWPLIVLHNKRITGRKMDGPVNKAFIEKWKNADALYATPTGSNDDW YWLYAAIKFKCLIVTNDEMRDHTFHLLGNDFFPRWKERHQVHFRFTDAGPDFDMPPPCSVVIQESEKGHWHIPIETEGEGEGEAEREWLCITRANSRTTR HSITTTPGGSQSVGHGKKQARSSMQTRVAIKPDRLKHNIPDNIRKPPQDYKNLKNILAASGFPDHRTVLSEIETAEELGDTVIDFQI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Potri.006G160300 [exp]	0	1
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Potri.016G078600 [exp]	2.00	0.9606
AT3G16000		MFP1	MAR binding filament-like prot...		Potri.001G179600 [exp]	2.23	0.9435
AT5G27730			Protein of unknown function (D...		Potri.013G016900 [exp]	2.64	0.9395
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Potri.009G100900 [exp]	3.16	0.9342
					Potri.016G121650 [exp]	4.00	0.9438
AT4G19830			FKBP-like peptidyl-prolyl cis-...		Potri.012G119800 [exp]	4.89	0.9311
AT1G03670			ankyrin repeat family protein ...		Potri.018G078450 [exp]	10.95	0.9203
AT1G22700			Tetratricopeptide repeat (TPR)...		Potri.019G085200 [exp]	11.61	0.9153
AT1G04880	ARID		HMG (high mobility group) box ...		Potri.017G055200 [exp]	12.40	0.9185
AT3G51430		SSL5, YLS2	YELLOW-LEAF-SPECIFIC GENE 2, S...		Potri.006G140500 [exp]	12.96	0.9199

Compare expression of checked genes

Potri.006G160300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.