Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29000 518 / 1e-178 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT2G20110 472 / 4e-161 CPP Tesmin/TSO1-like CXC domain-containing protein (.1.2) AT5G25790 259 / 4e-80 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G16160 118 / 6e-29 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G22760 110 / 2e-25 CPP SOL1 Tesmin/TSO1-like CXC domain-containing protein (.1) AT4G14770 109 / 8e-25 CPP ATTCX2 TESMIN/TSO1-like CXC 2 (.1) AT3G22780 106 / 7e-24 CPP ATTSO1, TSO1 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G04850 104 / 3e-23 CPP Tesmin/TSO1-like CXC domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G083000 [exp] 576 / 0 AT4G29000 410 / 9e-139 Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.018G039300 [exp] 350 / 3e-112 AT2G20110 269 / 2e-81 Tesmin/TSO1-like CXC domain-containing protein (.1.2) Potri.001G184800 [exp] 269 / 4e-83 AT2G20110 286 / 3e-90 Tesmin/TSO1-like CXC domain-containing protein (.1.2) Potri.010G083400 [exp] 114 / 2e-26 AT4G14770 504 / 6e-170 TESMIN/TSO1-like CXC 2 (.1) Potri.008G156100 [exp] 110 / 4e-25 AT4G14770 522 / 1e-176 TESMIN/TSO1-like CXC 2 (.1) Potri.005G051100 [exp] 108 / 2e-24 AT4G14770 300 / 1e-90 TESMIN/TSO1-like CXC 2 (.1) Potri.006G251200 [exp] 104 / 4e-23 AT3G22780 188 / 6e-50 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.018G030000 [exp] 98 / 4e-21 AT4G14770 207 / 1e-56 TESMIN/TSO1-like CXC 2 (.1) Potri.001G173600 [exp] 85 / 5e-17 AT3G22780 160 / 5e-41 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023656 [exp] 558 / 0 AT4G29000 491 / 2e-168 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10043225 [exp] 496 / 3e-170 AT4G29000 520 / 2e-179 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10011103 [exp] 447 / 1e-150 AT4G29000 463 / 8e-157 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10011693 [exp] 285 / 5e-88 AT4G29000 330 / 3e-105 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10009494 [exp] 276 / 3e-84 AT4G29000 335 / 2e-106 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10002895 [exp] 107 / 5e-24 AT3G22780 236 / 7e-68 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10002033 [exp] 107 / 6e-24 AT3G22780 248 / 4e-71 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10006604 [exp] 91 / 9e-19 AT4G14770 446 / 1e-147 TESMIN/TSO1-like CXC 2 (.1) Lus10039358 [exp] 91 / 2e-18 AT3G22760 367 / 9e-113 Tesmin/TSO1-like CXC domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03638 [poplar] [flax] TCR Tesmin/TSO1-like CXC domain, cysteine-rich domain
Representative CDS sequence Show only first row Show all	>Potri.006G160400.1 pacid=42769399 polypeptide=Potri.006G160400.1.p locus=Potri.006G160400 ID=Potri.006G160400.1.v4.1 annot-version=v4.1 ATGGGGGAAAGTGAGGGAAGCGAATTCCCTCCAAAAAAGCTGCAGCAATCGGAGACTGCAGATTTTCCGGCCAAAAAGCTAGCCAGACAGCTAGATTTCA CACAGGGTGTCCTTCCTGAATTGCAACCATCGCCTGTGGTGGTTACCCCGGCGTCCGCGCAGTGCCAGCCGCAGCCGCAGCCTCACCCACAACCGCAACC ACAGGTGGTTTCGATTCCAGTGGCACCGCAACAGCAGACGCAGCAGCAGCCAGCAGCGAGGGCCGTGAAACCAGAATCACCAAAATCAAGACCAAGACTG AATGCTGAATTGAAAGATGGCACTCCGAAGAAGCAAAAACAGTGCAACTGTAAACACTCTCGGTGCTTAAAGCTTTATTGTGAGTGCTTTGCCTCTGGAA CATACTGTGATGGGTGCAATTGCGTTAATTGTTATAACAATGTTGAAAATGAGGCTGCCAGGCGAGAAGCTGTCGAAGCAACTTTAGAGCGTAATCCAAA TGCATTCAGGCCAAAAATTGCAAGCAGCCCACATGGAACACGGGATAGTCGGGAAGAGACTGGGGAAGGATTGGTGTTTGTAAAGCACAATAAGGGATGT CACTGCAAGAAATCTGGATGTCTCAAAAAGTACTGTGAATGTTTCCAAGCAAACATTCTTTGTTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTG AAGGAAGCGAAGAGAGACAGGCTCTCTTTCATGGTGACCATGGCAACAACATGGCATATATTCAACAGGCTGCAAATGCTGCAATAACTGGGGCTATTGG ATCTTCTGGCTATGCTTCCCTGCCTGTATCTAGGAAGAGAAAAGGTCAGGAGCTTTTCTTTGGGCAGACAGTCAAGGATCCGTCATTTCACAGGCTTGGA CATTTTCAACAGGCTAGCCACATCAGGCCTGCTGCACCCTCCTCTCCATTGCCTTCTAATCCTGTTGCTCGAGCTGGTAACACTACAACATTGGGCTCAT CAAAAATCACATACAGGTCTCTCTTGGCAGACATTATCCAATCACAGGACTTAAAAGAACTTTGCTCAGTTTTAGTGGTTCTGTCAGGAGAAGCTGCCAA GACGCTTTCAGACCAAAGAAATTCAATGAAAAAGCGAGTAGAAGATCAAAGAGACACTTTTCTTGCTTCATCTACCCAAGAAAGGTTGCAGAGCCAGAAG GAAATTGATGCTGATAAAATTGTTTCTAATGATTGTTCGAGTGCAAACCATGAAGGAGGCCTTGACGATTCCAGCTTAGATGGTGTTGATATGCCAAAAG GAAGGCCAATGTCTCCTGGGACTATGGCATTGATGTGCGATGAACAAGATACGATCTTTATGGCTGCTGCTTCCCCCAATGGGTTGATGGGCCATGGCTG CGACAGTTCTTCACAACTGCCTTGTGGACAAGGCATGACAGAGGCTCATGCAGAGCAAGAAAGAATTGTTTTAATGAAGTTTCGAGATTGCCTTAATAGG CTCATCACATTCGGGGAAATAAAAGAAACGAAGTGTTCATCATTAGCCAGAACTGAGCTGGGGAATGAAAAAGGTCCACCCAGCACAGGTTTAGCAAATA CCAGAACTCGAACAGGGAGTCAACAGGGACCCTTTAGCAATGGGGTTGTTAAAGTTCCAGCAACTGCCAAACCACCCCAGATGGTTACTTCTATAGTTGC CACCTCTAGCAGTGATCTTAAAAAAATTCCTAGCCTCCCACAAAATGGAGATAACAAGCTGAAGTCTTGA
AA sequence Show only first row Show all	>Potri.006G160400.1 pacid=42769399 polypeptide=Potri.006G160400.1.p locus=Potri.006G160400 ID=Potri.006G160400.1.v4.1 annot-version=v4.1 MGESEGSEFPPKKLQQSETADFPAKKLARQLDFTQGVLPELQPSPVVVTPASAQCQPQPQPHPQPQPQVVSIPVAPQQQTQQQPAARAVKPESPKSRPRL NAELKDGTPKKQKQCNCKHSRCLKLYCECFASGTYCDGCNCVNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREETGEGLVFVKHNKGC HCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGNNMAYIQQAANAAITGAIGSSGYASLPVSRKRKGQELFFGQTVKDPSFHRLG HFQQASHIRPAAPSSPLPSNPVARAGNTTTLGSSKITYRSLLADIIQSQDLKELCSVLVVLSGEAAKTLSDQRNSMKKRVEDQRDTFLASSTQERLQSQK EIDADKIVSNDCSSANHEGGLDDSSLDGVDMPKGRPMSPGTMALMCDEQDTIFMAAASPNGLMGHGCDSSSQLPCGQGMTEAHAEQERIVLMKFRDCLNR LITFGEIKETKCSSLARTELGNEKGPPSTGLANTRTRTGSQQGPFSNGVVKVPATAKPPQMVTSIVATSSSDLKKIPSLPQNGDNKLKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Potri.006G160400 [exp]	0	1
AT5G64420			DNA polymerase V family (.1)		Potri.009G079900 [exp]	4.12	0.7816
AT5G07810			SNF2 domain-containing protein...		Potri.012G067000 [exp]	4.69	0.7495	CHR919
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Potri.009G050600 [exp]	11.61	0.7208
AT5G25800			Polynucleotidyl transferase, r...		Potri.005G186600 [exp]	17.32	0.7368
AT5G61330			rRNA processing protein-relate...		Potri.019G085100 [exp]	28.14	0.6739
AT3G12340			FKBP-like peptidyl-prolyl cis-...		Potri.007G000500 [exp]	29.49	0.7350
AT5G61450			P-loop containing nucleoside t...		Potri.001G125700 [exp]	37.68	0.7265
AT5G43470		HRT, RCY1, RPP8	RECOGNITION OF PERONOSPORA PAR...		Potri.003G150200 [exp]	42.66	0.6640
AT1G06560			NOL1/NOP2/sun family protein (...		Potri.005G204900 [exp]	45.47	0.6931
AT3G49400			Transducin/WD40 repeat-like su...		Potri.012G021900 [exp]	45.51	0.6888

Compare expression of checked genes

Potri.006G160400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.