Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28990 96 / 9e-22 RNA-binding protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G083100 [exp] 216 / 6e-67 AT4G28990 124 / 3e-32 RNA-binding protein-related (.1.2) Potri.009G076600 [exp] 43 / 0.0003 AT5G58470 199 / 4e-59 TBP-associated factor 15B (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023657 [exp] 166 / 3e-48 AT4G28990 122 / 4e-32 RNA-binding protein-related (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00641 [poplar] [flax] zf-RanBP Zn-finger in Ran binding protein and others
Representative CDS sequence Show only first row Show all	>Potri.006G160500.1 pacid=42770588 polypeptide=Potri.006G160500.1.p locus=Potri.006G160500 ID=Potri.006G160500.1.v4.1 annot-version=v4.1 ATGCAAACGCCTTACTCTCCCACGCTTGATATCTCCTTTTATACCACTTTTTATGGGGAGATGCCCTACCTGATGATTGATATCTTTGCAATTTTGTTGA ATTGGTTATTTCACAGTTTTTGGGTTAAATCTGCGGCTAGCATTGCTACTTTGCACCAACAAAATTTCTCCCTTGTTTTTGGGGGTTGCTCATCTTTAGA CTTTGCTGGCTTTTTTCCAGGGTATAGACTTCGTGCAGGTTCTGGTTCTCCTGTACGTCGTAGGGATGCAGATCGCCGATACAGTTCTGATTTTGATAAT TCGGGGGCCCCACCTCGAGGTCGTGATTTTAGCAATGGGAGGGATCGTGGTAGATTTCGAGATTCTTCACCCCCCTATGCTCGAGGAAGAGGTGGTGGCA GACCACTTGGCAGAGGTTTTGATGGGCCTGGATTTGGTCCAGGGCCTCTTAGAGGGGAGGGCGTGAGTAGGAATAATCCAAATGTACGCCCAAGGGAAGG CGACTGGATCTGCTCTGATCCTTTATGTGGCAACCTGAACTTTGCAAGGAGAGAGTACTGTAACAACTGCAAAAGGCCTCGATATAGACCTGGGGGAAGT CCTCGGCGGGGCTATCCCGGCCCTCCACCTCCACATGCTCCTCCAAGACGCTTTCCTGGTCCTCCATTGGATCTTTCTCCAGGCAGGACCATGAATGGCT ATAGGTCTCCTCCTCGAGGTTGGTCCAGAGATGGACCCAGAGATTTTGGGCCTGGTGGTCCTCCACCTCCTAGGCAAGGAGGCAGGTTTTCTGACCATGA TATGCGGAGGGAGCGGTCTGATTATCCAGATGATGAGTACAGGGTGAGGAACAAATTTGATAGACCTATGCCAATGGACTGGGGTCATAAAGACCGTGGA AGGGATGGCCTTTTCAATGAAAGGAAAGGGTTTGAGAGGCGGCCACCCTCTCCACCTCTACCTCCACCTTCACTTCCTCAACGTGGCAGATGGGGACGTG ACGGGAGAGATAGGAGCAGATCTCCAATTAGGGGAGCCCCACCACCAAAAGAGTTTCGACAGGATATGTACATGGAGCGGGGGCGAGATGATCGGCATCC TGTTGGGCGAGACAGAATGAGACATGTGTATTGA
AA sequence Show only first row Show all	>Potri.006G160500.1 pacid=42770588 polypeptide=Potri.006G160500.1.p locus=Potri.006G160500 ID=Potri.006G160500.1.v4.1 annot-version=v4.1 MQTPYSPTLDISFYTTFYGEMPYLMIDIFAILLNWLFHSFWVKSAASIATLHQQNFSLVFGGCSSLDFAGFFPGYRLRAGSGSPVRRRDADRRYSSDFDN SGAPPRGRDFSNGRDRGRFRDSSPPYARGRGGGRPLGRGFDGPGFGPGPLRGEGVSRNNPNVRPREGDWICSDPLCGNLNFARREYCNNCKRPRYRPGGS PRRGYPGPPPPHAPPRRFPGPPLDLSPGRTMNGYRSPPRGWSRDGPRDFGPGGPPPPRQGGRFSDHDMRRERSDYPDDEYRVRNKFDRPMPMDWGHKDRG RDGLFNERKGFERRPPSPPLPPPSLPQRGRWGRDGRDRSRSPIRGAPPPKEFRQDMYMERGRDDRHPVGRDRMRHVY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28990			RNA-binding protein-related (....		Potri.006G160500 [exp]	0	1
AT1G60650		AtRZ-1b	AtRZ-1b, RNA-binding (RRM/RBD/...		Potri.008G033000 [exp]	1.00	0.7521
AT2G17787			unknown protein		Potri.005G242300 [exp]	2.44	0.7263
AT4G33690			unknown protein		Potri.009G082200 [exp]	2.82	0.6903
AT4G17070			peptidyl-prolyl cis-trans isom...		Potri.001G150300 [exp]	4.47	0.6873
AT1G54390		ING2	INHIBITOR OF GROWTH 2, PHD fin...		Potri.019G033800 [exp]	6.48	0.6798
AT1G70740			Protein kinase superfamily pro...		Potri.010G109700 [exp]	8.36	0.6772
AT4G18905			Transducin/WD40 repeat-like su...		Potri.007G019601 [exp]	15.87	0.6626
AT5G49230		HRB1	HYPERSENSITIVE TO RED AND BLUE...		Potri.019G027300 [exp]	17.23	0.5847
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Potri.010G226300 [exp]	18.76	0.5781	ARA6.1
AT2G30330		BLOS1	BLOC subunit 1, GCN5L1 family ...		Potri.013G156700 [exp]	23.87	0.6105

Compare expression of checked genes

Potri.006G160500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.