Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67280 572 / 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) AT1G11840 454 / 4e-161 ATGLX1 glyoxalase I homolog (.1.2.3.4.5.6) AT1G08110 74 / 3e-15 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G084800 [exp] 641 / 0 AT1G67280 553 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Potri.018G042100 [exp] 503 / 6e-180 AT1G67280 488 / 3e-174 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Potri.004G013200 [exp] 452 / 1e-160 AT1G11840 496 / 8e-179 glyoxalase I homolog (.1.2.3.4.5.6) Potri.009G007200 [exp] 80 / 5e-17 AT1G08110 318 / 6e-111 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4) Potri.006G239802 [exp] 92 / 2e-11 AT1G67280 90 / 7e-13 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043235 [exp] 574 / 0 AT1G67280 551 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Lus10011115 [exp] 570 / 0 AT1G67280 543 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Lus10038612 [exp] 458 / 5e-162 AT1G67280 455 / 4e-161 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Lus10003523 [exp] 458 / 4e-159 AT1G11840 495 / 5e-174 glyoxalase I homolog (.1.2.3.4.5.6) Lus10002943 [exp] 414 / 2e-146 AT1G11840 447 / 5e-160 glyoxalase I homolog (.1.2.3.4.5.6) Lus10000007 [exp] 131 / 1e-37 AT1G11840 131 / 1e-39 glyoxalase I homolog (.1.2.3.4.5.6) Lus10021429 [exp] 77 / 2e-16 AT1G08110 297 / 3e-104 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4) Lus10016138 [exp] 77 / 5e-16 AT1G08110 302 / 2e-104 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0104 [poplar] [flax] Glyoxalase PF00903 [poplar] [flax] Glyoxalase Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Representative CDS sequence Show only first row Show all	>Potri.006G160600.2 pacid=42769640 polypeptide=Potri.006G160600.2.p locus=Potri.006G160600 ID=Potri.006G160600.2.v4.1 annot-version=v4.1 ATGGTGAGGATAATACCTATGGTGTCCTCCTCAATTAGACCATCATCCTACCTGACTTGTTCTTCATTCATGTTCTGTAATGCTTGTGCCCCTTCTCGCA GATTCGCTTATCTTGCTACCGCTGTTCCGCAATCACATTTCTTCGGTTTGAAAGCTTCGTCTAAGATTTGGAGAGGAGAGAGTAGAACCATTGCAACTGG AAATATGGCACAAGCAAGCACAGCTGCTACTCAAGAAAGTTTGTTGGAGTGGGTAAAAAAGGACAAGCGTAGAATGCTACATGTTGTTTATCGTGTTGGG GATTTGGACAGGACTATAAAGTTCTACACTGAGTGTCTGGGGATGAAGCTGCTGAGGAAACGTGACATACCTGAGGAGAGATATACAAATGCCTTTCTTG GATATGGACCGGAAGACTCCCACTTCGTCATAGAACTCACTTACAATTATGGAGTTGACAGCTATGATATTGGAGCTGGATTTGGACATTTCGGCATTGC AGTTGAGGATGTTGCCAAGACTGTTGAACTCATAAAGGCCAAGGGTGGCAAAGTGAACAGAGAACCCGGTCCTGTTAAAGGTGGCAGTACAGTTATTGCT TTTATTGAAGATCCTGATGGTTATAAATTTGAACTATTGGAAAGGGGACCTACCCCTGAGCCACTCTGTCAGGTCATGCTTCGTGTTGGTGATCTTGATC GTTCTATAAATTTTTACGAGAAGGCTTTTGGCATGAAGCTTCTCCGCAAAAGAGATAATCCAGAGTACAAGTATACAATAGCCATGATGGGTTATGGGTC TGAAGATAAAAATTGTGTGCTGGAGTTGACGTACAACTATGGGGTCACTGAATATGACAAAGGAAATGCGTATGCTCAGATTGCGATAGGCACAGATGAT GTCTATAGAACTGCAGAAGCAGTTGAAATTTTTGGTGGAAAAGTTACCCGAGAGCCTGGACCATTACCTGGTATCAACACCAAGATCACTGCTTGCTTAG ATCCAGATGGTTGGAAGACGGTTTTTGTAGATAACATTGACTTTCTCAAGGAATTGGAGGGAGTCTGA
AA sequence Show only first row Show all	>Potri.006G160600.2 pacid=42769640 polypeptide=Potri.006G160600.2.p locus=Potri.006G160600 ID=Potri.006G160600.2.v4.1 annot-version=v4.1 MVRIIPMVSSSIRPSSYLTCSSFMFCNACAPSRRFAYLATAVPQSHFFGLKASSKIWRGESRTIATGNMAQASTAATQESLLEWVKKDKRRMLHVVYRVG DLDRTIKFYTECLGMKLLRKRDIPEERYTNAFLGYGPEDSHFVIELTYNYGVDSYDIGAGFGHFGIAVEDVAKTVELIKAKGGKVNREPGPVKGGSTVIA FIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRSINFYEKAFGMKLLRKRDNPEYKYTIAMMGYGSEDKNCVLELTYNYGVTEYDKGNAYAQIAIGTDD VYRTAEAVEIFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNIDFLKELEGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67280			Glyoxalase/Bleomycin resistanc...		Potri.006G160600 [exp]	0	1
AT5G57040			Lactoylglutathione lyase / gly...		Potri.018G056200 [exp]	2.64	0.9783
AT5G15802			unknown protein		Potri.017G099600 [exp]	2.64	0.9684
AT5G01920		STN8	State transition 8, Protein ki...		Potri.006G109700 [exp]	4.47	0.9768
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Potri.005G127100 [exp]	5.19	0.9578	Pt-GGPS1.2
AT2G25080		ATGPX1	glutathione peroxidase 1 (.1)		Potri.006G265400 [exp]	6.32	0.9697
AT1G35340			ATP-dependent protease La (LON...		Potri.013G105500 [exp]	8.94	0.9697
AT4G13430		ATLEUC1, IIL1	isopropyl malate isomerase lar...		Potri.010G065100 [exp]	11.83	0.9543
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Potri.008G101100 [exp]	12.12	0.9734
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Potri.005G209500 [exp]	16.06	0.9694
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Potri.008G172100 [exp]	17.60	0.9659	RNP1.2

Compare expression of checked genes

Potri.006G160600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.