Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19580 668 / 0 glyoxal oxidase-related protein (.1) AT1G67290 657 / 0 GLOX1 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) AT1G75620 446 / 7e-151 glyoxal oxidase-related protein (.1) AT3G57620 434 / 2e-146 glyoxal oxidase-related protein (.1) AT1G19900 433 / 1e-145 glyoxal oxidase-related protein (.1) AT1G14430 429 / 3e-144 glyoxal oxidase-related protein (.1) AT3G53950 397 / 5e-132 glyoxal oxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G084200 [exp] 1093 / 0 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1) Potri.002G027000 [exp] 462 / 5e-157 AT1G75620 708 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235500 [exp] 458 / 1e-155 AT1G19900 699 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235600 [exp] 452 / 3e-153 AT1G19900 692 / 0.0 glyoxal oxidase-related protein (.1) Potri.001G083600 [exp] 452 / 3e-153 AT1G14430 520 / 2e-180 glyoxal oxidase-related protein (.1) Potri.013G034900 [exp] 442 / 2e-149 AT3G57620 670 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G047701 [exp] 441 / 6e-149 AT3G57620 677 / 0.0 glyoxal oxidase-related protein (.1) Potri.010G034200 [exp] 437 / 3e-147 AT1G14430 653 / 0.0 glyoxal oxidase-related protein (.1) Potri.016G103400 [exp] 404 / 8e-135 AT3G53950 801 / 0.0 glyoxal oxidase-related protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011111 [exp] 745 / 0 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1) Lus10043231 [exp] 740 / 0 AT5G19580 647 / 0.0 glyoxal oxidase-related protein (.1) Lus10034959 [exp] 739 / 0 AT1G67290 619 / 0.0 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) Lus10043230 [exp] 726 / 0 AT5G19580 620 / 0.0 glyoxal oxidase-related protein (.1) Lus10012979 [exp] 724 / 0 AT5G19580 619 / 0.0 glyoxal oxidase-related protein (.1) Lus10011110 [exp] 717 / 0 AT5G19580 597 / 0.0 glyoxal oxidase-related protein (.1) Lus10011109 [exp] 706 / 0 AT5G19580 622 / 0.0 glyoxal oxidase-related protein (.1) Lus10012981 [exp] 494 / 3e-171 AT1G67290 412 / 3e-139 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) Lus10015949 [exp] 444 / 1e-149 AT3G57620 654 / 0.0 glyoxal oxidase-related protein (.1) Lus10030798 [exp] 434 / 1e-145 AT1G14430 623 / 0.0 glyoxal oxidase-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07250 [poplar] [flax] Glyoxal_oxid_N Glyoxal oxidase N-terminus CL0159 [poplar] [flax] E-set PF09118 [poplar] [flax] DUF1929 Domain of unknown function (DUF1929)
Representative CDS sequence Show only first row Show all	>Potri.006G160800.1 pacid=42767966 polypeptide=Potri.006G160800.1.p locus=Potri.006G160800 ID=Potri.006G160800.1.v4.1 annot-version=v4.1 ATGGCAATTGTGTTCAAGCCTCTTTTTGTTCTCCCTCTCTTTTTTCTTTCCAGTTACGCCCAACTTTGGTTGAGGCCTGATGCCTACGTATTATTAAACA AGAAAAAGATCTTAGGCCCTCATGAATTGTTCAACGACCCTTTTGGAGATGCTCTAGATTATAAGAGGAAAAAGATCACAGATGATTTCGGGACTGCCCC ACTATCAGATTTCGAAAAACCTTCTGTTCTTCCTAATTATGTGGGTCTACCTAATGAACCTAAAGGGAGATGGGAGTTGGTTACTGTGAATTCTGGTGTA TCTGCCATGCATGCAATCTTGCTTCCTAGAGTTAACAAGGTTTTAATGTATGATGCTACCATTTGGAAGAAATCAGAAATCCGGTTGCCTACCGGGCATT GCCGTCTGCTTAACCAGACTACAGGTGAAAAGGATTGTTATTGTCATTCAGTTTTGTTTGACGTTGCCACAACGGCACTAACACCACTGCAGCTTCACAC AGATACATGGTGCTCATCAGGAGGTCTTTCCGTTGATGGAAACCTGGTGGGCACTGGCGGTTTCCAAGGAGGTGCCAATACTGTTAGATACTTGGAGACA TGTAAAGGCTGTAACTGGAGAGAATTTCCAACGGCACTTGCTGATCGTAGATGGTACTCAACACAAGCGGAACTACCTGATGGTGGATTCATCGTGGTTG GTGGTCGCGAAGCTTTTAGTTATGAGTACATTCCACGAGAAGGAGACTCCAATGCCAAGTCCTACTTCTTTGACTTCCTCAAGAAAACCAGTGATAGGGA TGAGAACAATTTGTATCCTTTCGTCCACCTCTCCACCGATGGCAACCTCTTCATCTTTGCCAATAATCGTGCCGTCCTGCTCAATCCCAAATCCAACAAG GTTGTCCGTGAGTTCCCAGCCCTTCCAGGAGGTCATCGCAGCTACCCTGCCACCGGAATGTCTGCGCTGCTCCCAATAAAACTACACTCCAAGAATAATG ATGTCATCCCAGCTGAAGTCTTGGTTTGTGGAGGCTCCGGACACAAAGATGCATATACCCAAGCTAGCAGAGATATTTTCTACACAGCACTCCAAGACTG TGGAAGAATCAGAATTACAGATAAAAAGCCTGTCTGGAAGAGAGAAATCATGCCATCACCCCGTGTTATGGGTGACATGGTGATTCTTCCCACGGGAGAC ATCCTCATGCTCAATGGTGCTAAGAGAGGATGCTCGGGATGGGGTTTTGCCAGAGAACCAAATTTGGCCCCAGCAATATATTATCCCAAAGCAAAGTTAG GCAACAGATTTAAGCAACTAAAAGCCTCTATAATTCCAAGAATGTACCATTCATCTTCTGTGGTACTACCAGACGGTAAAGTCCTTGTGGCTGGAAGCAA CACAAACAATGGCTACGTTTATAATGCCATGTTCCCCACTGAATTAAGAGTTGAGAAATTCTCCCCACCTTACTTGGATCCATCTGTGGCAGTGCATAGA CCTGTGATTGTAACTGATAAAGCCCCAGAGAAGATTAGTTATGATGAGACGTTCCAGCTCCAAATCAAATCAACAGCAGTAAAAGTAGAGAAGAAAGACA TCAAAGTAACAATGTATGCTCCTGCTTTTACCACTCATGGGGTGTCAATGAATCAAAGACTCCTCGACTTGGGTTTGGAGGATGTGATTGCCGAAAATGC TTTCCTAGGGATCCACACTATCACCGTTGTGTCACCACCTAGCGGTAAGGTTGCTCCTCCTGGGTATTACATGCTCTTTGTTGTTCATCAAGGAGTGCCA AGTGTTTCCACCTGGGTGCAGATCAAGTGA
AA sequence Show only first row Show all	>Potri.006G160800.1 pacid=42767966 polypeptide=Potri.006G160800.1.p locus=Potri.006G160800 ID=Potri.006G160800.1.v4.1 annot-version=v4.1 MAIVFKPLFVLPLFFLSSYAQLWLRPDAYVLLNKKKILGPHELFNDPFGDALDYKRKKITDDFGTAPLSDFEKPSVLPNYVGLPNEPKGRWELVTVNSGV SAMHAILLPRVNKVLMYDATIWKKSEIRLPTGHCRLLNQTTGEKDCYCHSVLFDVATTALTPLQLHTDTWCSSGGLSVDGNLVGTGGFQGGANTVRYLET CKGCNWREFPTALADRRWYSTQAELPDGGFIVVGGREAFSYEYIPREGDSNAKSYFFDFLKKTSDRDENNLYPFVHLSTDGNLFIFANNRAVLLNPKSNK VVREFPALPGGHRSYPATGMSALLPIKLHSKNNDVIPAEVLVCGGSGHKDAYTQASRDIFYTALQDCGRIRITDKKPVWKREIMPSPRVMGDMVILPTGD ILMLNGAKRGCSGWGFAREPNLAPAIYYPKAKLGNRFKQLKASIIPRMYHSSSVVLPDGKVLVAGSNTNNGYVYNAMFPTELRVEKFSPPYLDPSVAVHR PVIVTDKAPEKISYDETFQLQIKSTAVKVEKKDIKVTMYAPAFTTHGVSMNQRLLDLGLEDVIAENAFLGIHTITVVSPPSGKVAPPGYYMLFVVHQGVP SVSTWVQIK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19580			glyoxal oxidase-related protei...		Potri.006G160800 [exp]	0	1
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Potri.006G160700 [exp]	1.00	0.9741
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Potri.004G101900 [exp]	5.47	0.8829
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Potri.002G078600 [exp]	6.00	0.9350	ACO1
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Potri.004G109765 [exp]	7.74	0.8621
AT4G27730		ATOPT6	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.012G019500 [exp]	10.39	0.9150
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.015G013300 [exp]	13.85	0.9010
AT4G18335			unknown protein		Potri.004G132400 [exp]	15.49	0.8770
AT1G67330			Protein of unknown function (D...		Potri.001G056300 [exp]	15.74	0.8958
AT3G57450			unknown protein		Potri.012G032500 [exp]	16.43	0.8949
AT2G13570	CCAAT	NF-YB7	"nuclear factor Y, subunit B7"...		Potri.005G065300 [exp]	17.14	0.8364

Compare expression of checked genes

Potri.006G160800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.