Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28910 306 / 2e-99 NINJA novel interactor of JAZ (.1.2.3) AT3G29575 71 / 1e-13 AFP3 ABI five binding protein 3 (.1.3.4) AT3G07250 67 / 2e-11 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (.1) AT1G13740 64 / 8e-11 AFP2 ABI five binding protein 2 (.1) AT1G69260 62 / 4e-10 AFP1 ABI five binding protein (.1) AT3G02140 61 / 9e-10 AFP4, TMAC2 TWO OR MORE ABRES-CONTAINING GENE 2, ABI FIVE BINDING PROTEIN 4, AFP2 (ABI five-binding protein 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G085100 [exp] 831 / 0 AT4G28910 324 / 3e-106 novel interactor of JAZ (.1.2.3) Potri.008G096500 [exp] 70 / 8e-13 AT1G13740 240 / 6e-77 ABI five binding protein 2 (.1) Potri.010G157900 [exp] 66 / 2e-11 AT1G13740 229 / 1e-72 ABI five binding protein 2 (.1) Potri.017G094500 [exp] 64 / 9e-11 AT1G13740 169 / 1e-49 ABI five binding protein 2 (.1) Potri.004G120600 [exp] 62 / 4e-10 AT1G13740 176 / 5e-52 ABI five binding protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011116 [exp] 423 / 3e-144 AT4G28910 259 / 1e-81 novel interactor of JAZ (.1.2.3) Lus10043236 [exp] 409 / 2e-138 AT4G28910 265 / 9e-84 novel interactor of JAZ (.1.2.3) Lus10037084 [exp] 72 / 7e-14 AT1G13740 197 / 2e-61 ABI five binding protein 2 (.1) Lus10036898 [exp] 70 / 3e-13 AT1G69260 200 / 2e-62 ABI five binding protein (.1) Lus10004645 [exp] 70 / 6e-13 AT1G13740 233 / 2e-74 ABI five binding protein 2 (.1) Lus10026667 [exp] 69 / 1e-12 AT1G13740 237 / 5e-76 ABI five binding protein 2 (.1) Lus10022764 [exp] 68 / 4e-12 AT3G29575 113 / 2e-29 ABI five binding protein 3 (.1.3.4) Lus10003145 [exp] 64 / 1e-10 AT3G29575 112 / 4e-29 ABI five binding protein 3 (.1.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF16135 [poplar] [flax] TDBD Tify domain binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G162900.3 pacid=42767199 polypeptide=Potri.006G162900.3.p locus=Potri.006G162900 ID=Potri.006G162900.3.v4.1 annot-version=v4.1 ATGGAGGATGAGAATGGGCTTGAGCTTAGTTTGGGTCTAGGTTGTGGTGGATCATCTTCCAAATCCAAAGGTAAAAATGGCAGCTCTTCAGATACTAGGA TGGATAAAGGTGATAGAGGCAACAAATTGGTAGATGATTTTATAAATTTTCTTCATGGTACTCCTACCCAGAAGCAAGATTCAAGTGCTAGATCTCAAAG AAGTGATTCAGTGAAACCTCAAGAGAAGTTCTTTGATGACCTTACCAAGAACAATGCTGAAGCAGATGCTTCTATTAACTTGAACAGTAGGGGGCTGTGG GTTTCAAGCACTAATAGATCTGCAGAAAATGTTGAAGAAAAAAGACCAGACCTGGGTAACAAGCGTAAACTGTTATTTGATGAGTTAAATAATCAGAAGA AGCACGAGAGAGATGCTCATCATGCTGATTTACATGACAAGAAATCACATATTTTAATAACCACAGAAGATGGCTCAACTGCTGAAAATGAAGATGTGGC AGAGTCTGAAGTTGAGGGTTCCACCTCAAGGTTGGCTTCTCACCATGATAATGGTGCGAAACAGTTTATTGGAGTTGGAGGTCCACCTGAGGCTACAAAG GAGGTTCGTGGATTTTCTGATTCAAGTGTTGTGGAGTTACAAGGACAAAGGAGGCTCAATGGTTCTTCAGAAAATGAATTCAAGCAGGGAAACTTAAATT ATGGAGTTCCATTCTCAGTCCAACCAGTAAGCATCATGAATGTGCCTTACTCATTTCCTGTGAATAAGTCTAACTCTGTAGGTGCGCCCAGCACTTCAGG CCATCCAATAACAGGCATGATTCAGGTGTTGCCTACTTCAAATGGTGAGCAGCGAACAGGGAACCAATCTGTGAATACTGGAAATTTGCAAGTTATGTTT GGCTATTCCCCAGTCCAGCTTCCGACATTGGATAAAGATAATTCCTGGGGCTTGATCTCTCATATTCAACAGTTCCCTGCTTCCTATGCTGGCAGAGCTC TGTCAAATGCAGAGAAGCAGAATGATGGGCTGAAGATTTCTCAAGCCATGCAAGCTATTGCTCGAAATTTGACTGAGGTTGAACAACATGAAGGGAGCAC ATTGGGACAGGCCAAAGGCGACGGCAAACAACTTATTGTAGAGGTAGGCTCCTCTTCTCATACTGAAGATGATGCAAAAGGAAGCACCATGAACCTTAGG CCAAAGGATGCACCCAAACAATCAACAGCAGAAACACTCTGTTTTGATTTTTCAGCCATAAAGCCAGGTATTGGCCCAGCCATGAAAATTGGGGGATGTG GTTCGTATCCGAATTTGCCATGGGTATCTACCACATTGCCTGGCCCAAATGGCAGAACGATTTCTGGTGTTACCTACAAATACAGTGCAAATGAAATCAG GATTGTATGTGCCTGTCATGGTTCCCACATGTCCCCTGAGGAGTTTGTTCGACATGCAAGTGAAGAAAATGTTAATCCAGGTAATGGCAACGGGTTAGCA ACATTCCCAGGAACCAATCCTGCTGCCTCTACTCAGAGCTGA
AA sequence Show only first row Show all	>Potri.006G162900.3 pacid=42767199 polypeptide=Potri.006G162900.3.p locus=Potri.006G162900 ID=Potri.006G162900.3.v4.1 annot-version=v4.1 MEDENGLELSLGLGCGGSSSKSKGKNGSSSDTRMDKGDRGNKLVDDFINFLHGTPTQKQDSSARSQRSDSVKPQEKFFDDLTKNNAEADASINLNSRGLW VSSTNRSAENVEEKRPDLGNKRKLLFDELNNQKKHERDAHHADLHDKKSHILITTEDGSTAENEDVAESEVEGSTSRLASHHDNGAKQFIGVGGPPEATK EVRGFSDSSVVELQGQRRLNGSSENEFKQGNLNYGVPFSVQPVSIMNVPYSFPVNKSNSVGAPSTSGHPITGMIQVLPTSNGEQRTGNQSVNTGNLQVMF GYSPVQLPTLDKDNSWGLISHIQQFPASYAGRALSNAEKQNDGLKISQAMQAIARNLTEVEQHEGSTLGQAKGDGKQLIVEVGSSSHTEDDAKGSTMNLR PKDAPKQSTAETLCFDFSAIKPGIGPAMKIGGCGSYPNLPWVSTTLPGPNGRTISGVTYKYSANEIRIVCACHGSHMSPEEFVRHASEENVNPGNGNGLA TFPGTNPAASTQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Potri.006G162900 [exp]	0	1
AT4G07950			DNA-directed RNA polymerase, s...		Potri.012G015900 [exp]	4.00	0.8579
AT1G22540			Major facilitator superfamily ...		Potri.019G079551 [exp]	4.00	0.8393
AT4G14790		ATSUV3, EDA15	embryo sac development arrest ...		Potri.010G084100 [exp]	7.07	0.8114
AT2G16365			F-box family protein (.1.2.3.4...		Potri.009G118651 [exp]	7.21	0.7842
AT4G13020		MHK	Protein kinase superfamily pro...		Potri.002G247500 [exp]	9.21	0.7987	MHK.1
AT1G54570			Esterase/lipase/thioesterase f...		Potri.005G046600 [exp]	9.59	0.7891
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.007G040400 [exp]	9.79	0.7879
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Potri.002G089900 [exp]	10.48	0.8358
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Potri.004G225800 [exp]	10.95	0.7649
AT3G06560		PAPS3	poly(A) polymerase 3 (.1)		Potri.008G102500 [exp]	11.40	0.8038

Compare expression of checked genes

Potri.006G162900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.