Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20020 643 / 0 CAF1, ATCAF1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT1G23400 424 / 2e-140 CAF2, ATCAF2 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G31010 277 / 5e-86 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) AT5G54890 256 / 8e-79 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G01370 68 / 2e-11 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT3G18390 58 / 3e-08 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G29750 56 / 7e-08 CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G23070 54 / 3e-07 ATCFM3A CRM family member 3A (.1) AT4G14510 52 / 2e-06 ATCFM3B CRM family member 3B (.1) AT3G25440 51 / 2e-06 LOH1 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G042500 [exp] 451 / 5e-151 AT1G23400 655 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.014G074400 [exp] 289 / 2e-90 AT4G31010 501 / 1e-177 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Potri.001G423800 [exp] 272 / 1e-84 AT5G54890 514 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.001G350801 [exp] 76 / 1e-13 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Potri.012G056100 [exp] 66 / 6e-11 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G077100 [exp] 64 / 3e-10 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.006G148901 [exp] 51 / 1e-06 AT4G29750 314 / 4e-101 CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.014G176900 [exp] 50 / 3e-06 AT3G25440 411 / 9e-141 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Potri.013G083000 [exp] 47 / 3e-05 AT4G13070 331 / 9e-113 RNA-binding CRS1 / YhbY (CRM) domain protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011119 [exp] 606 / 0 AT2G20020 598 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10043237 [exp] 605 / 0 AT2G20020 605 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10012974 [exp] 583 / 0 AT2G20020 544 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10029134 [exp] 429 / 1e-142 AT1G23400 712 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10013029 [exp] 417 / 7e-136 AT1G23400 658 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10034952 [exp] 281 / 2e-87 AT2G20020 274 / 2e-85 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10041383 [exp] 276 / 2e-85 AT4G31010 526 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Lus10040080 [exp] 271 / 9e-84 AT5G54890 484 / 2e-172 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10036545 [exp] 230 / 1e-68 AT4G31010 446 / 8e-157 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Lus10019623 [exp] 212 / 1e-63 AT5G54890 318 / 4e-109 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [poplar] [flax] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Potri.006G163100.1 pacid=42770495 polypeptide=Potri.006G163100.1.p locus=Potri.006G163100 ID=Potri.006G163100.1.v4.1 annot-version=v4.1 ATGGCGCTAAAATTATTTCCAACCCCGTTCCCAATCTTTGCACCACCGTCTCCGAACCCATCCCACCGTCCGTCCACCGAGGTCCACTTCTCTCGATGGT TCAACGCCAATGCAGACAAATTCAACCAACGCTACCGCTCCCAACAAGAAATCGAAGAAGATATCAGCCGCCGTCGCCGCTTCACTTCCGCCAACAACAT CGTCACTAATTACGACCCGAAAAACGCCGCTGAAGTAGATATCTCTTTTTTCAAATCCACTGGCACACCTTCCTCTCCTTCCTCTCCTTCTATCCCGGGT AAGAAATCTAAATACTCCAAACCCTTGAAAAAAACCCACCCAGCTTTTCTTCCCAAAATTACCAGAGTGCCCCTACCGCGAAACAACGCCAAACCCCCCA TTGACAGGAAAGCAGACATCAAGCTAAGCGAAGACGGCGTCTCCTATGTAATAGACGGCGCACCGTTCGAGTTCAAGTACAGCTACACGGAGACGCCGAA GGTGAAGCCGTTGAAACTAAGGGAGGCGCCGTATGCGCCGTTTGGGCCCATCACGATGCCAAGGCCTTGGACTGGGCGTGCCCCGTTGCCGCCCAGCAAA AAGAAGCTGAGAGAGTTTGATTCGTTTGTTTTGCCCCCTCCGGATAAGAAGGGAGTCAAGCCGGTTCAGGCACCGGGTCCCTTTTTGCCCGGGGCGGGCC CTAGGTACGCAAAGACTAGAGAGGAGATATTAGGTGATCCTTTGACACAAGAGGAGATTCAAGAGTTGGTTGATGGATGCTTGAAAGCGAAGCGACAATT GAATATGGGGAGAGATGGTTTGACGCATAACATGTTGGATAATATACATGCGCATTGGAAGCGGAGGAGAGTGTGTAAAATCAAATGCAAAGGAGTATGT ACTGTGGATATGGACAATGTGTGTCAGCAATTAGAGGAAAGGACTGGAGGGAAGATCATTTACAGAAAGGGAGGGGTGTTGTATCTTTTCCGAGGAAGAA ACTACAACTATCGATTTCGACCCCGCTTTCCTCTTATGTTGTGGAAACCTGTTACGCCTGTTTATCCAAGGTTGATTCAACGAGCTCCGGAGGGTCTAAC ATTGCAAGAAGCATCTGGGATGCGGAATAAAGGGCGGAAACTGATACCAATATGTAAACTAGGGAAAAATGGTGTGTACCGTGATTTAGTGAGAAATGTC AGAGAGGCGTTTGAAGAGTGTGAATTGGTCCGAATAAATTGTCAAGGGATGAATGGAAGTGATTTTAGGAAAATTGGAGCCAAACTCAGGGACCTTGTCC CATGTGTGCTGATCTCATTTGAATGCGAGCACATCCTCATGTGGAGGGGAAGAGATTGGAAGTCCTCCTTCACAAAACCAGTAAATGATGGTGATGAAGC TAAGAATTCTAGCATTGACGGTGCAACTTCTGCCACACCACTTTTGGAGGGCCTACAAAATGAAACTTTCTCAGTAAAGGATGCCAGCACACTGAATTTA AAAACGTCCAGGATGGATGCTGAAGATCAAGGAGAGGATCTATCCCAAAAGGACATAGATGAGACATTTGCAGCTAAGATTTTTATTTCAACCTCAACAG AAATCTATGAAAGTAAAACCACACCAGATAATGATGACAGTTCTGCTGTTACCAAGTCTGAAGCCATGAGAATTGCAAGTGGCAGTGAAGTAATATTGGA TGATAGAGGGTATATTGATGAAATGCTAATTACCACGTCGGTGGAATCTGATACCACACTGGAAAGAATTGGGAACATGGAAAAGCTCCAAAATGTTTCA GAAGGTTCCCATGTTAGTGAACTGGCAAAATTGAATGAATCTTATACGCAGGGAGTTTTAGAATTGTTGAAACAAGCTGTTGAGATTGGGAGTGCAGTTG TCCTAGATGCAAATTTGGATGCTGATGCGGTTTACCAAAAGGCAGTTGCCTTTGCACAGTCTGCTCCTCCTGGTCCTGTTTTTAGGCGCCAACCCAGGAA CACAGTGGTTCAAAAGAGCGAGATGCAAGAAAACGGGGAATTGGAAGTTAAACAAGTCACAAGCTTTTCCAAGATGGGAGGAGGTAGCGAGAGGAAGAGT TCTAAGGTTAGAAGAAAATATTTCAATGAACAATATGTAGATTCTGTACCACAAGGAAGCCTAAGAGTGGATGAACTTGCTAAACTGTTGGCATGA
AA sequence Show only first row Show all	>Potri.006G163100.1 pacid=42770495 polypeptide=Potri.006G163100.1.p locus=Potri.006G163100 ID=Potri.006G163100.1.v4.1 annot-version=v4.1 MALKLFPTPFPIFAPPSPNPSHRPSTEVHFSRWFNANADKFNQRYRSQQEIEEDISRRRRFTSANNIVTNYDPKNAAEVDISFFKSTGTPSSPSSPSIPG KKSKYSKPLKKTHPAFLPKITRVPLPRNNAKPPIDRKADIKLSEDGVSYVIDGAPFEFKYSYTETPKVKPLKLREAPYAPFGPITMPRPWTGRAPLPPSK KKLREFDSFVLPPPDKKGVKPVQAPGPFLPGAGPRYAKTREEILGDPLTQEEIQELVDGCLKAKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVC TVDMDNVCQQLEERTGGKIIYRKGGVLYLFRGRNYNYRFRPRFPLMLWKPVTPVYPRLIQRAPEGLTLQEASGMRNKGRKLIPICKLGKNGVYRDLVRNV REAFEECELVRINCQGMNGSDFRKIGAKLRDLVPCVLISFECEHILMWRGRDWKSSFTKPVNDGDEAKNSSIDGATSATPLLEGLQNETFSVKDASTLNL KTSRMDAEDQGEDLSQKDIDETFAAKIFISTSTEIYESKTTPDNDDSSAVTKSEAMRIASGSEVILDDRGYIDEMLITTSVESDTTLERIGNMEKLQNVS EGSHVSELAKLNESYTQGVLELLKQAVEIGSAVVLDANLDADAVYQKAVAFAQSAPPGPVFRRQPRNTVVQKSEMQENGELEVKQVTSFSKMGGGSERKS SKVRRKYFNEQYVDSVPQGSLRVDELAKLLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Potri.006G163100 [exp]	0	1
AT2G44760			Domain of unknown function (DU...		Potri.002G138600 [exp]	1.41	0.9786
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Potri.002G029600 [exp]	4.00	0.9671
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Potri.005G105800 [exp]	5.65	0.9720
AT3G54090		FLN1	fructokinase-like 1 (.1)		Potri.016G109600 [exp]	6.24	0.9722
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Potri.010G153900 [exp]	7.93	0.9672
AT1G02150			Tetratricopeptide repeat (TPR)...		Potri.002G139400 [exp]	8.36	0.9709
AT4G01037		AtWTF1	what's this factor?, Ubiquitin...		Potri.002G169300 [exp]	9.16	0.9692
AT1G51100			unknown protein		Potri.001G417350 [exp]	12.48	0.9443
AT2G37920		EMB1513	embryo defective 1513, copper ...		Potri.006G092100 [exp]	12.48	0.9636
AT1G23180			ARM repeat superfamily protein...		Potri.008G131900 [exp]	13.00	0.9630

Compare expression of checked genes

Potri.006G163100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.