Plant FIBer expression Database

Potri.006G163700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G77180 714 / 0 SKIP chromatin protein family (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G086100
[exp]
907 / 0 AT1G77180 749 / 0.0 chromatin protein family (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039685
[exp]
766 / 0 AT1G77180 826 / 0.0 chromatin protein family (.1.2.3)
Lus10027157
[exp]
471 / 3e-162 AT1G77180 541 / 0.0 chromatin protein family (.1.2.3)
Lus10027158
[exp]
234 / 4e-74 AT1G77180 227 / 5e-72 chromatin protein family (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02731 SKIP_SNW SKIP/SNW domain
Representative CDS sequence
>Potri.006G163700.5 pacid=42769502 polypeptide=Potri.006G163700.5.p locus=Potri.006G163700 ID=Potri.006G163700.5.v4.1 annot-version=v4.1
ATGGCGGCTTTAAAGGAATTACTGCCTCCGGTTAAATCCACTACCACAACTTATTATGATCATTCCAATGATCCATGGTTCAAGCAGAGGTTTAGTTCAT
CTGAGGCTGAACAATCTGCTTCTGCTGCAATTAAGCATAACCCCGTACCTCCGTACTTGCAGCGTAAGGGTTTTGTTCCCAGGAAAGTTGAAGATTTTGG
TGATGGGGGTGCATTTCCTGAGATTCATGTTGCTCAATACCCGCTTGATATGGGTAGGAGTAAATCTGCAAAACCTGGTTCGAAGATTTTGGCGTTGACT
GTTGATGCTCATGGGAACGTTGCTTATGATGCAATTGTGAAACAGAATGAGAATGCCAAGAAGATTGTGTATTCGCAACATAAGGATTTGATTCCAAAGC
TGTTGAAGAGTGAGGAAGAGGGAGATGAGGATGAGGATGAGGATGAGGAATTGCAGAAAGAGATTGAGGAGACCACGCTGGAAACAAAAGCTGCACTTGA
AAAAATTGTGAATGTCAGGTTGAGCGCAGCGCAGCCAAAGAATGTGCCCAAACAATCTTCGGATTCGAAGTATATTAAGTATAAGCCTTCGCAGCAGTCA
GCAGCATTTAACTCGGGTGCCAAAGAGAGGATTATTAGAATGGTGGAGATGCCCGTGGACCCCCTTGAGCCACCTAAGTTCAAGCATAAGAGGGTTCCTA
AGGCCTCGGGATCACCACCTGTGCCGGTTATGCACTCGCCACCTCGACCTGTGACTGTGAAAGATCAGCAGGATTGGAAAATCCCACCTTGTATCTCAAA
TTGGAAGAATCCTAAGGGTTACACAATTCCTCTTGATAAGCGTCTGGCTGCTGATGGAAGAGGCCTGCAGGATGTTCAGATTAATGATAATTTTGCTAAG
CTATCAGAGGCCCTTTATGTTGCTGAGCAGAAGGCTAGAGAAGCTGTTGCTATGAGATCCAAGGTTCAAAAGGAAATGATGATGAAGGAGAAGGAAAGGA
AAGAGCAGGAGTTGCGGGCATTAGCTCAGAAAGCACGTTCTGAGAGAACCGGTGCAGCACCCCCACCTTCTGCTCCAGTTCCATTAGAGAGGGGTGCAAT
GGATGATGTTGACATGAGAGGGGATTATGAACACGTGAAGGAAAGGGAGAGGGATGCCCCAAAGGAGACAAGGGAAGAGAGGGAAGAGAGGCTGCGACGT
GAGAAAATTCGTGAGGAGCGCCGTCGAGAAAGGGAGAGAGAAAGAAGACTGGAAGCAAAAGATGCTGCAATGGGTAAGAAGAGCAAGATCACAAGAGATA
GAGATCGTGACATCAGTGAGAAGGTTGCTCTTGGTATGGCCTCTACTGGAGCTGGGAAAGGGGGAGAAGTTGCATATGATCAAAGGTTGTTCAACCAAGA
GAAAGGAATGGATTCTGGTTTTGCTGCTGATGATCAATACAACGTGTACGACAAAGGCCTTTTCACAGCTCAGCCCACACTTTCAACTCTATATCAGCCA
AAGAAGAATGCTGATGCTGATATGTATGGAGGTGCAGATGAGCAAATAGATAAGATAATGAAGACTGAACGATTCAAACCTGACAAGGAATTTGCTGGTA
CTTCACAGAGGACTGGCCCACGGGACAGGCCAGTTGAGTTTGAGAAGGATGAAGAAGAAGCTGATCCATTTGGTCTGGATCAGTTTTTGACTGAAGTGAA
GAAGGGTAAGAAAGCCATGGACAAAGTTGGTTCTGGTGGCACAATGAGAGCTAGTGGAGGATCTTCAACACGAGATGGCCATGATGGAGGCTCTGGTAGA
ACTCGTATTGGATTTGAGAGGGGGCGATAG
AA sequence
>Potri.006G163700.5 pacid=42769502 polypeptide=Potri.006G163700.5.p locus=Potri.006G163700 ID=Potri.006G163700.5.v4.1 annot-version=v4.1
MAALKELLPPVKSTTTTYYDHSNDPWFKQRFSSSEAEQSASAAIKHNPVPPYLQRKGFVPRKVEDFGDGGAFPEIHVAQYPLDMGRSKSAKPGSKILALT
VDAHGNVAYDAIVKQNENAKKIVYSQHKDLIPKLLKSEEEGDEDEDEDEELQKEIEETTLETKAALEKIVNVRLSAAQPKNVPKQSSDSKYIKYKPSQQS
AAFNSGAKERIIRMVEMPVDPLEPPKFKHKRVPKASGSPPVPVMHSPPRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDVQINDNFAK
LSEALYVAEQKAREAVAMRSKVQKEMMMKEKERKEQELRALAQKARSERTGAAPPPSAPVPLERGAMDDVDMRGDYEHVKERERDAPKETREEREERLRR
EKIREERRRERERERRLEAKDAAMGKKSKITRDRDRDISEKVALGMASTGAGKGGEVAYDQRLFNQEKGMDSGFAADDQYNVYDKGLFTAQPTLSTLYQP
KKNADADMYGGADEQIDKIMKTERFKPDKEFAGTSQRTGPRDRPVEFEKDEEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGHDGGSGR
TRIGFERGR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G77180 SKIP chromatin protein family (.1.2... Potri.006G163700
[exp]
0 1
AT5G40340 Tudor/PWWP/MBT superfamily pro... Potri.004G130600
[exp]
2.44 0.8944
AT3G11540 SPY SPINDLY, Tetratricopeptide rep... Potri.006G208900
[exp]
2.82 0.9000 Pt-SPY.2
AT1G20960 EMB1507 embryo defective 1507, U5 smal... Potri.015G095500
[exp]
3.16 0.8916
AT3G15010 RNA-binding (RRM/RBD/RNP motif... Potri.001G377400
[exp]
5.65 0.8630
AT1G52380 NUP50 (Nucleoporin 50 kDa) pro... Potri.001G179100
[exp]
6.00 0.8935
AT5G56930 C3HZnF EMB1789 embryo defective 1789, CCCH-ty... Potri.006G148400
[exp]
6.70 0.8788
AT2G44730 Trihelix Alcohol dehydrogenase transcri... Potri.002G139500
[exp]
7.48 0.8830
AT1G21700 CHB4, ATSWI3C SWITCH/sucrose nonfermenting 3... Potri.005G180800
[exp]
7.48 0.8920 CHB904,CHB4.1
AT3G54350 FHA EMB1967 embryo defective 1967, Forkhea... Potri.002G028300
[exp]
7.74 0.8730
AT4G29940 HD PRHA pathogenesis related homeodoma... Potri.006G075500
[exp]
9.16 0.8664

Potri.006G163700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.