Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19680 513 / 0 Leucine-rich repeat (LRR) family protein (.1) AT5G22320 61 / 3e-10 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT4G35470 57 / 6e-09 PIRL4, DREB1C plant intracellular ras group-related LRR 4 (.1) AT2G17440 55 / 3e-08 PIRL5 plant intracellular ras group-related LRR 5 (.1) AT1G07390 54 / 7e-08 AtRLP1 receptor like protein 1 (.1.2.3) AT1G78230 54 / 7e-08 Outer arm dynein light chain 1 protein (.1) AT4G03260 52 / 5e-07 Outer arm dynein light chain 1 protein (.1.2) AT5G07180 50 / 1e-06 ERL2 ERECTA-like 2 (.1) AT2G26330 49 / 3e-06 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT3G11330 47 / 1e-05 PIRL9 plant intracellular ras group-related LRR 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G086200 [exp] 602 / 0 AT5G19680 486 / 5e-174 Leucine-rich repeat (LRR) family protein (.1) Potri.004G199200 [exp] 67 / 6e-12 AT5G22320 354 / 2e-118 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.005G098600 [exp] 64 / 5e-11 AT4G35470 672 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.002G008175 [exp] 62 / 3e-10 AT4G08850 566 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.001G144100 [exp] 61 / 4e-10 AT4G35470 448 / 6e-153 plant intracellular ras group-related LRR 4 (.1) Potri.002G008100 [exp] 60 / 9e-10 AT4G08850 565 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.007G065000 [exp] 59 / 2e-09 AT4G35470 693 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.011G090200 [exp] 57 / 9e-09 AT2G34680 1307 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Potri.015G048800 [exp] 54 / 5e-08 AT5G07910 341 / 2e-119 Leucine-rich repeat (LRR) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012715 [exp] 472 / 9e-169 AT5G19680 458 / 2e-163 Leucine-rich repeat (LRR) family protein (.1) Lus10010891 [exp] 392 / 5e-138 AT5G19680 384 / 3e-135 Leucine-rich repeat (LRR) family protein (.1) Lus10010892 [exp] 119 / 2e-33 AT5G19680 104 / 2e-28 Leucine-rich repeat (LRR) family protein (.1) Lus10013308 [exp] 71 / 3e-13 AT5G22320 362 / 9e-122 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10005198 [exp] 66 / 1e-11 AT5G22320 318 / 9e-105 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10035976 [exp] 62 / 3e-10 AT4G35470 652 / 0.0 plant intracellular ras group-related LRR 4 (.1) Lus10016684 [exp] 60 / 1e-09 AT1G55325 733 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10009394 [exp] 54 / 9e-08 AT3G47570 642 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10018514 [exp] 54 / 1e-07 AT4G03260 509 / 1e-172 Outer arm dynein light chain 1 protein (.1.2) Lus10020932 [exp] 52 / 6e-07 AT1G78230 448 / 1e-149 Outer arm dynein light chain 1 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF12799 [poplar] [flax] LRR_4 Leucine Rich repeats (2 copies) CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G163900.4 pacid=42769214 polypeptide=Potri.006G163900.4.p locus=Potri.006G163900 ID=Potri.006G163900.4.v4.1 annot-version=v4.1 ATGGACGGCGAGACGCAATCACCAAGGGGCTCCAACCCTGAGGCAGACGATCAAACGGTCGAAATTGATCCATCAAGCACCGTCCTTGACCTAACCAGCT TTCAGCTTCATGATCTCAACTCAGTGGAGTTATCTCCGAGTCTCACCGAGTTAGACCTGACCGCGAATCGTTTGTCGAGCTTGGACCCTAGAATCGCGCA TCTCTCGAACCTCATAAAGCTCTCTCTCCGTCAAAACCTCATCGACGATGCTGCTATTGAGCCTTTCTCTCGCTGGGACTCAATTTCCGGTCTACAGGAG CTGGTGTTAAGGGATAATAAGCTGAAGAAAATACCGGATACCGGCATATTCAAGAGTCTTTTGGTTTTTGATGTTTCTTTCAATGAAATTACTTCCTTGC ATGGATTGTCTAAAGCCTCTAACACTCTCAAGGAACTTTATGTATCTAAAAATGAAGTTACTAAGATAGAGGAGATTGATCACCTCTATCAGTTGCAAAT TCTCGAACTTGGTTCCAACAGATTACGGGTGATGGAGAATATGGGAAATTTTACAAGTTTACAGGAGCTGTGGATGGGAAGAAATCGTATCAAAGTAGTT AATCTATGTGGGTTGAAATGCATTAAGAAGCTTAGCTTGCAAAGCAACCGTTTAACTTCTATGAAAGGATTTGAGGAATGTGTTGCTTTAGAAGAACTGT ACTTGAGCCATAACGGTATTGCCAAAATGGAAGGCTTGTCAACCTTGGCCAATCTTCATGTACTCGATGTATCATCTAACAAGCTAACTTCAGTGGACGA CATTCAGAACCTCACCCAGTTGGAGGATCTGTGGCTCAATGACAACCAAATAGAATCACTTAAAGGCGTTGCTGAGGCTGTCATCTCTTCAAGAGAGAAA CTAACCACAATCTACCTCGAAAACAATCCATGTGCAAAATCTACAAACTACACTGCCTTTTTGAGAGAGTTTTTTCCAAATATTGAGCAAATTGACTCCA ATGTGTTTGCCTAG
AA sequence Show only first row Show all	>Potri.006G163900.4 pacid=42769214 polypeptide=Potri.006G163900.4.p locus=Potri.006G163900 ID=Potri.006G163900.4.v4.1 annot-version=v4.1 MDGETQSPRGSNPEADDQTVEIDPSSTVLDLTSFQLHDLNSVELSPSLTELDLTANRLSSLDPRIAHLSNLIKLSLRQNLIDDAAIEPFSRWDSISGLQE LVLRDNKLKKIPDTGIFKSLLVFDVSFNEITSLHGLSKASNTLKELYVSKNEVTKIEEIDHLYQLQILELGSNRLRVMENMGNFTSLQELWMGRNRIKVV NLCGLKCIKKLSLQSNRLTSMKGFEECVALEELYLSHNGIAKMEGLSTLANLHVLDVSSNKLTSVDDIQNLTQLEDLWLNDNQIESLKGVAEAVISSREK LTTIYLENNPCAKSTNYTAFLREFFPNIEQIDSNVFA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19680			Leucine-rich repeat (LRR) fami...		Potri.006G163900 [exp]	0	1
					Potri.015G107925 [exp]	1.00	0.8187
					Potri.015G114501 [exp]	3.00	0.7974
AT1G15780			unknown protein		Potri.003G025200 [exp]	3.16	0.8120
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Potri.006G108800 [exp]	4.47	0.7853	Pt-VMVSR.1
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Potri.013G091400 [exp]	7.41	0.7804
AT4G21570			Protein of unknown function (D...		Potri.001G405700 [exp]	8.83	0.7798
AT1G55840			Sec14p-like phosphatidylinosit...		Potri.001G369400 [exp]	11.31	0.7476
AT5G36930			Disease resistance protein (TI...		Potri.005G003900 [exp]	11.53	0.7761
AT4G06599			ubiquitin family protein (.1)		Potri.003G011300 [exp]	12.64	0.7735
AT3G07568			unknown protein		Potri.014G197400 [exp]	13.60	0.7150

Compare expression of checked genes

Potri.006G163900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.