Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20000 1098 / 0 CDC27b, HBT HOBBIT, CDC27 family protein (.1) AT3G16320 452 / 5e-149 CDC27a Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G48150 115 / 1e-26 CDC23, APC8 anaphase-promoting complex subunit 8 (.1) AT1G78770 53 / 6e-07 APC6 anaphase promoting complex 6 (.1) AT3G04240 50 / 5e-06 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11540 46 / 9e-05 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G086300 [exp] 1368 / 0 AT2G20000 1146 / 0.0 HOBBIT, CDC27 family protein (.1) Potri.012G075000 [exp] 119 / 1e-27 AT3G48150 957 / 0.0 anaphase-promoting complex subunit 8 (.1) Potri.017G065600 [exp] 76 / 3e-16 AT2G20000 74 / 2e-16 HOBBIT, CDC27 family protein (.1) Potri.011G108800 [exp] 61 / 2e-09 AT1G78770 907 / 0.0 anaphase promoting complex 6 (.1) Potri.001G389300 [exp] 61 / 2e-09 AT1G78770 911 / 0.0 anaphase promoting complex 6 (.1) Potri.013G051400 [exp] 53 / 1e-06 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G170000 [exp] 49 / 2e-05 AT5G56290 1046 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Potri.019G025600 [exp] 49 / 2e-05 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G208900 [exp] 47 / 5e-05 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012968 [exp] 1159 / 0 AT2G20000 1126 / 0.0 HOBBIT, CDC27 family protein (.1) Lus10034945 [exp] 808 / 0 AT2G20000 801 / 0.0 HOBBIT, CDC27 family protein (.1) Lus10042152 [exp] 124 / 2e-29 AT3G48150 904 / 0.0 anaphase-promoting complex subunit 8 (.1) Lus10004242 [exp] 119 / 7e-28 AT3G48150 895 / 0.0 anaphase-promoting complex subunit 8 (.1) Lus10003576 [exp] 59 / 2e-08 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030525 [exp] 58 / 2e-08 AT1G78770 847 / 0.0 anaphase promoting complex 6 (.1) Lus10012876 [exp] 57 / 5e-08 AT1G78770 806 / 0.0 anaphase promoting complex 6 (.1) Lus10033033 [exp] 52 / 2e-06 AT5G63200 542 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1) Lus10021336 [exp] 47 / 7e-05 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00515 [poplar] [flax] TPR_1 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF07719 [poplar] [flax] TPR_2 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF12895 [poplar] [flax] ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 CL0020 [poplar] [flax] TPR PF13181 [poplar] [flax] TPR_8 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13374 [poplar] [flax] TPR_10 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.006G164000.1 pacid=42767267 polypeptide=Potri.006G164000.1.p locus=Potri.006G164000 ID=Potri.006G164000.1.v4.1 annot-version=v4.1 ATGGAGGCGATTCTAATAGACTGTGTAAACAACAGTCTTCGCCATTTCATGTATCGAAACTCCATTTTCATGTGTGAACGACTCTGCGCTGAGTTTCCTT CCGAGACAAATTTACAATTGTTAGCCGGATGTTATTTGCAAAATAGTCAAGCTTACTCTGCATATCATATTCTAAAAGGAACACAAATGGCTCAATCTCG CTACTTGTTTGCGATATCATGCTTTCAGATGGATCTTCTAAATGAAGCTGAAGCGGCATTATGTCCTCCTAATGAGCCTGGTGCTGAGGTTCCAAATGGT GCACCTGGGCATTTCCTTCTTGGGCTTATCTACAGGTATACCGATAGAAGGAAAAGTGCCATCCATCACTTTAAGCAGGCTTTATCTATAGATCCTTTAT TCTGGGCCGCCTATGAGCAGCTTTGTATATTAGGTGCTGCTGAAGAAGCAGCTGCAGTTTTTGATGAAGCAGCTGCTCTTTGCATTCAAAAGCAGTACAT GAATTGTGCGTCAGCATCCCATAACTTGAGCATATCCAATGAGGATCATAATTTAGTTTCTGCTCGAAACTTTGGCTTGGAAGATGGAAGTCCAAGGCAG TTGAAACACTTACAAGGGAATAACCTCAGAGATATTCCTGGAAATTACCATGGAGCCTCTACATTAGGAGGGCCTGTTAGTCAGCCTTCAAATGGTGTTC CTCCAAACCTGTCATTTTATAACACTCCTTCACCAATGGCCACACAGTTGTCAGGTGTCGCGCCACCACCATTGTGCAGAAACTTGCAGCCAAATTGTTC AAATCCTAGTACACTTGGTTCTGATAACTTTCCTAGGTCGATTGTGAGTTCTAATATTCAGGCCCCTCGTAAAAAGTTTGTTGATGAAGGGAAATTGCGG AAGATTTCTGGGAGGTTATTTTTTGATTCTGGCCCTCGGCGAAGCACAAGGCTTGCTGCAGAAGCAGGAGCCAACCAAAATACTAGTGCTACACTGGTTG CAGGGTATGGAACTAACAACTCATCTAAATATCTCGGGGGTTCCAAGTTGAGTTCTATGGCAATACGTTCAGTGACAGTTCGTAAGGGACAGTCATGGGC CAATGAAAATTATGATGAAGGTATACGGAATGAGGCTTTTGATGATTCACGTGCAAATAATACATCTTCAAATTGTAGTTCATCGCCTCCTGGGGATTCT AGACCTCTTGAAACAGAAGTAGCAACCATGCCTGTTGGTGGAGTAATCATAAGTGCTTCATGTATCTTAAATGGTGCTTTAGAAATATTAGGCCTCCTGA GAACTCTTGGGGAAGGTTATAGACTTTTTTGCATGTACAGATGCCAGGATGCACTGGATGTGTACATGAAACTACCACACAAGCATTATAATACAGGCTG GGTGCTTTGCCAGGTTGGAAAAGCTTATGTTGAATTAGTGGATTATTTGGAAGCTGATAGAGCCTTCAGTCTTGCCCGTCGAGCATCACCTTACAGTTTA GAAGGATTGGATGTATATTCTACAGTTCTTTATCATTTGAAGGAAGAAATGAAGTTAAGTTACCTGGCTCAGGAACTGATATCAACTGATCGTTTAGCTC CTCAATCTTGGTGTGCCATGGGAAATTGCTATAGTCTGCAGAAAGACCATGAAACTGCCTTGAAAAATTTCCAGAGAGCTGTACAACTTGATTCGAGATT TGCATATGCACACACCTTATGTGGTCATGAATATGTTGCCTTGGATGATTTTGAGAATGGAATTAAGAGTTACCAGAGTGCTCTACGGATAGATGCTAGG CATTACAAGTCCTGGCATGGGCTTGGGATGGTCTATCTTCGACAAGAGAAAAACGAGTTTTCTGAGCATCACTTCCAAATGGCTTTCCAAATAAATCCAC ATTCTTCTGTGATAATGTCTTATCTTGGGACGGCTTTGCATGCCTTGAAGAGAAACGAGGAAGCTCTAGAGATGATGGAGAGGGCAATTTTAGCTGATAA GAAGAACCCTCTTCCCATGTATCAGAAGGCTAATATACTTGTGAGCTTGGAAAGCTTTGATGAAGCTCTAGATGTCCTAGAAGAGCTGAAAGAGTATGCT CCACGTGAAAGCAGTGTTTATGCTTTGATGGGTAAGATTTATAAGAGGCGTAACATGTATGAGAAGGCAATGCTTCACTTTGGTCTTGCGTTGGATTTCA AACCATCAGCAACCGATGTTGCTACAATTAAGGCTGACATAGAGAAGCTGCATGTACCAGATGAATTAGAAGACAGCTTGTAG
AA sequence Show only first row Show all	>Potri.006G164000.1 pacid=42767267 polypeptide=Potri.006G164000.1.p locus=Potri.006G164000 ID=Potri.006G164000.1.v4.1 annot-version=v4.1 MEAILIDCVNNSLRHFMYRNSIFMCERLCAEFPSETNLQLLAGCYLQNSQAYSAYHILKGTQMAQSRYLFAISCFQMDLLNEAEAALCPPNEPGAEVPNG APGHFLLGLIYRYTDRRKSAIHHFKQALSIDPLFWAAYEQLCILGAAEEAAAVFDEAAALCIQKQYMNCASASHNLSISNEDHNLVSARNFGLEDGSPRQ LKHLQGNNLRDIPGNYHGASTLGGPVSQPSNGVPPNLSFYNTPSPMATQLSGVAPPPLCRNLQPNCSNPSTLGSDNFPRSIVSSNIQAPRKKFVDEGKLR KISGRLFFDSGPRRSTRLAAEAGANQNTSATLVAGYGTNNSSKYLGGSKLSSMAIRSVTVRKGQSWANENYDEGIRNEAFDDSRANNTSSNCSSSPPGDS RPLETEVATMPVGGVIISASCILNGALEILGLLRTLGEGYRLFCMYRCQDALDVYMKLPHKHYNTGWVLCQVGKAYVELVDYLEADRAFSLARRASPYSL EGLDVYSTVLYHLKEEMKLSYLAQELISTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAVQLDSRFAYAHTLCGHEYVALDDFENGIKSYQSALRIDAR HYKSWHGLGMVYLRQEKNEFSEHHFQMAFQINPHSSVIMSYLGTALHALKRNEEALEMMERAILADKKNPLPMYQKANILVSLESFDEALDVLEELKEYA PRESSVYALMGKIYKRRNMYEKAMLHFGLALDFKPSATDVATIKADIEKLHVPDELEDSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Potri.006G164000 [exp]	0	1
AT5G27550			P-loop containing nucleoside t...		Potri.005G031801 [exp]	7.61	0.8325
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Potri.016G031900 [exp]	12.96	0.7765
AT4G22760			Tetratricopeptide repeat (TPR)...		Potri.003G116100 [exp]	13.07	0.7849
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Potri.003G107700 [exp]	14.49	0.7885
					Potri.017G047000 [exp]	16.43	0.8149
AT5G08450			unknown protein		Potri.018G145552 [exp]	17.66	0.7974
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Potri.002G024100 [exp]	18.33	0.7917	XRN2.1
AT2G26310			Chalcone-flavanone isomerase f...		Potri.018G048500 [exp]	18.81	0.7205
AT3G57600	AP2_ERF	DREB2F	Integrase-type DNA-binding sup...		Potri.006G054500 [exp]	20.00	0.7544	Pt-DREB2.1
AT1G01880			5'-3' exonuclease family prote...		Potri.002G152801 [exp]	28.28	0.7608

Compare expression of checked genes

Potri.006G164000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.